Bioconductor TCGA

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GDCRNATools TCGA

7 days ago glaciya2018 • 0

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226

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TCGAbiolinks TCGA clinical TCGA-BRCA

written 7 weeks ago by BioinfoMug • 0

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171

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TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data

9 weeks ago BioinfoMug • 0

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2.9k

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illimina 450k methylation qsea MEDIPS TCGA

updated 4 months ago by Matthias Lienhard ▴ 240 • written 7.1 years ago by justinburgener ▴ 20

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531

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recount3 TCGA RNASeq

updated 5 months ago by Leonardo Collado Torres ★ 1.0k • written 6 months ago by tangming2005 ▴ 190

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504

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TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 510

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494

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BatchEffect TCGA WGCNA

updated 10 months ago by ATpoint ★ 4.1k • written 10 months ago by khaserdene99 • 0

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1.0k

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DESeq2 recount GTEx TCGA recount3

updated 12 months ago by ATpoint ★ 4.1k • written 12 months ago by David ▴ 20

8 results • Page 1 of 1

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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …

Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k

In that case both time and treatment are identical things, so choose one and go with it.

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Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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