Bioconductor TCGAbiolinks

Showing : TCGAbiolinks • reset

vote

1.9k

views

tcgabiolinks TCGAdownload

updated 9.3 years ago by Tiago C. Silva ▴ 270 • written 9.3 years ago by roladali ▴ 20

votes

1.5k

views

TCGAbiolinks

9.3 years ago hibari.kyouya • 0

votes

replies

1.9k

views

TCGA tcgabiolinks R

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by j.ritchie • 0

votes

replies

2.6k

views

tcga tcgabiolinks microarray exons oligonucleotide

updated 9.4 years ago by Tiago C. Silva ▴ 270 • written 9.4 years ago by Fernando • 0

votes

replies

968

views

microarray tcgabiolinks rnaseq

9.5 years ago Fernando • 0

vote

replies

3.0k

views

cancer microarray bioconductor tcgabiolinks

9.5 years ago Fernando • 0

vote

replies

1.4k

views

tcgabiolinks bug

9.5 years ago Marcel Ramos 700

votes

2.4k

views

TCGAbiolinks

updated 9.5 years ago by phil.chapman ▴ 150 • written 9.5 years ago by sf.tonny • 0

vote

1.3k

views

TCGAbiolinks bug

9.6 years ago Marcel Ramos 700

votes

replies

3.7k

views

tcgabiolinks

updated 9.6 years ago by Tiago C. Silva ▴ 270 • written 9.6 years ago by maedakus ▴ 10

votes

replies

1.6k

views

tcgabiolinks

updated 9.6 years ago by Tiago Chedraoui Silva ▴ 260 • written 9.6 years ago by maedakus ▴ 10

votes

replies

2.5k

views

tcgabiolinks

9.6 years ago maedakus ▴ 10

votes

replies

5.3k

views

tcgabiolinks Error in `colnames

9.7 years ago zeeniajagga • 0

vote

replies

1.7k

views

tcgabiolinks

updated 9.7 years ago by Mike Smith ★ 6.6k • written 9.7 years ago by maedakus ▴ 10

vote

replies

6.6k

views

software error TCGAbiolinks

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by yizhong2md • 0

165 results • Page 4 of 4

Recent ...

Replies

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Comment: DESeq2 design for haplotype MPRA by Rita • 0

Thank you very much, I appreciate it!

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

Awards • All