Showing : TCGAbiolinks • reset
0
votes
0
replies
824
views
TCGAvisualize_EAbarplot error in TCGAbiolinks
tcgabiolinks tcgavisualize_EAbarplot differential expression
7.8 years ago fawazfebin ▴ 60
0
votes
0
replies
1.2k
views
Error in move(i, file.path(path, i)) : I could not find the file: 95a5d709-7454-4f76-84b0-a505c32baeb5 ; GDCdownload error
tcgabiolinks gdcdownload tcga-brca
7.8 years ago fawazfebin ▴ 60
3
votes
5
replies
3.1k
views
GDCdownload error in TCGAbiolinks: Invalid zip name argument
tcgabiolinks gdcdownload unzip
updated 7.8 years ago by ▴ 260 • written 7.8 years ago by ▴ 60
7
votes
6
replies
3.4k
views
Analysis using TCGAbiolinks
tcgabiolinks triple negative breast cancer data sets
updated 7.8 years ago by ▴ 50 • written 7.8 years ago by ▴ 60
0
votes
0
replies
1.2k
views
Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
7.8 years ago lisa8191 • 0
2
votes
5
replies
2.4k
views
Error when prepare the TCGAdata
tcgabiolinks dna methylation
updated 7.9 years ago by 700 • written 7.9 years ago by • 0
6
votes
11
replies
4.2k
views
Error and weird result of TCGAanalyze_Normalization function using the R package TCGAbiolinks for normalization of raw HTSeq counts
tcgabiolinks rnaseq normalization EDASeq
updated 7.9 years ago by ▴ 50 • written 7.9 years ago by ▴ 840
1
vote
7
replies
2.9k
views
Cannot retrieve projects from TCGA using getGDCprojects function
tcgabiolinks TCGA software error
7.9 years ago jacorvar ▴ 40
1
vote
5
replies
1.7k
views
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks
updated 7.9 years ago by ▴ 40 • written 7.9 years ago by • 0
1
vote
2
replies
2.1k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error error tcgabiolinks GDCquery
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
2
votes
2
replies
3.0k
views
TCGAbiolinks Download ERROR
TCGA tcgabiolinks download error
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
4
votes
2
replies
3.0k
views
TCGA-biolink: GRCH38 RNA-seq, normalized counts matrix, Converting ensemble gene name into common gene name
tcgabiolinks grch38 annotation
updated 8.0 years ago by ▴ 270 • written 8.0 years ago by • 0
6
votes
3
replies
3.0k
views
TCGAbiolinks GDCquery Error: Parsing problems
tcgabiolinks
updated 8.0 years ago by ▴ 50 • written 8.0 years ago by ▴ 100
2
votes
11
replies
4.6k
views
package or namespace load failed for TCGAbiolinks
tcgabiolinks
updated 8.0 years ago by ▴ 200 • written 8.1 years ago by • 0
0
votes
1
reply
1.6k
views
Error downloading the package
tcgabiolinks TCGA DOWNLOAD
updated 8.1 years ago by 68k • written 8.1 years ago by ▴ 30
0
votes
2
replies
3.4k
views
Unable to install TCGAbiolinks
tcgabiolinks
updated 8.1 years ago by 4.2k • written 8.1 years ago by • 0
0
votes
0
replies
1.0k
views
Error in mRNAselected_values_ordered[1:(lastelementTOP - 1)]
tcgabiolinks TCGA survival analysis
8.1 years ago lqfuture • 0
1
vote
1
reply
1.0k
views
TCGAbiolinks XML error
tcgabiolinks
updated 8.1 years ago by • 0 • written 8.3 years ago by ▴ 20
1
vote
2
replies
1.8k
views
Problem with TCGAbiolinks Enrichment analysis
tcgabiolinks
updated 8.3 years ago by • 0 • written 8.4 years ago by ▴ 10
0
votes
1
reply
2.2k
views
How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.3 years ago by ★ 1.6k • written 8.3 years ago by • 0
0
votes
2
replies
4.0k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
8.3 years ago f.geist ▴ 20
0
votes
0
replies
1.1k
views
TCGAbiolinks : TCGAdownload Error in curl
R tcgabiolinks tcgadownload error
8.4 years ago juniuskcc • 0
1
vote
3
replies
3.3k
views
Data download via TCGAbiolinks
tcgabiolinks
updated 8.4 years ago by • 0 • written 9.7 years ago by ▴ 10
0
votes
3
replies
1.8k
views
TCGA controlled data
R tcgabiolinks gdcprepare
8.4 years ago ugandhar.ch1 • 0
0
votes
0
replies
2.2k
views
TCGAbiolinks Installation Issues
tcgabiolinks
8.4 years ago natalie_stephenson • 0
4
votes
20
replies
4.1k
views
TCGAbiolinks Error in gene.location$ensembl_gene_id : $ operator is invalid for atomic vectors
tcgabiolinks
updated 8.5 years ago by ★ 6.6k • written 8.5 years ago by ▴ 200
0
votes
2
replies
4.5k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.6 years ago by ▴ 260 • written 8.7 years ago by • 0
1
vote
1
reply
1.2k
views
Problem with using GDC_queryMaf()
tcgabiolinks maf mutations
updated 8.6 years ago by ▴ 260 • written 8.7 years ago by ▴ 150
0
votes
3
replies
2.3k
views
TCGAbiolinks maf files RAS mutation rate not matching maf files from firehose
TCGAbiolinks
8.7 years ago tangming2005 ▴ 200
1
vote
1
reply
1.8k
views
TCGAbiolinks query error
tcgabiolinks
8.7 years ago gaiusjaugustus • 0
0
votes
1
reply
1.0k
views
Meaning of subtype_methylation.Clusters , subtype_miRNA.Clusters, subtype_CN.Clusters
tcgabiolinks
updated 8.7 years ago by ▴ 260 • written 8.7 years ago by • 0
1
vote
2
replies
1.7k
views
Error in 'rownames' while using TCGAanalyze_Normalization in TCGA_biolinks
tcgabiolinks error
8.8 years ago salvl ▴ 10
0
votes
0
replies
748
views
Issues performing Analysis with TCGAbiolinks
tcgabiolinks bioconductor normalization
8.8 years ago ammarsabir15 • 0
1
vote
2
replies
2.0k
views
Multiple problems with TCGAbiolinks 2.2.6
software error tcgabiolinks ubuntu
updated 8.8 years ago by ▴ 260 • written 8.8 years ago by • 0
0
votes
1
reply
1.2k
views
Data type error
tcgabiolinks
updated 8.9 years ago by ▴ 260 • written 8.9 years ago by • 0
1
vote
1
reply
2.2k
views
Install problems on centos 7 of TCGAbiolinks
tcgabiolinks centos7
updated 8.9 years ago by ★ 6.6k • written 8.9 years ago by ▴ 40
0
votes
11
replies
4.2k
views
TCGAbiolinks GDCquery downloads a file that reads "message": "internal server error"
tcgabiolinks gdc
8.9 years ago jshelton • 0
0
votes
3
replies
1.3k
views
GDCPrepare function returns a function
TCGAbiolinks
updated 8.9 years ago by ▴ 260 • written 8.9 years ago by • 0
2
votes
6
replies
4.6k
views
Getting a flat metadata table from the XML files in TCGA: is it feasible?
tcgabiolinks
updated 8.9 years ago by ▴ 260 • written 8.9 years ago by ★ 1.1k
3
votes
7
replies
5.8k
views
Getting the metadata for a RNA-seq sample from TCGA when you have the uuid
tcgabiolinks tcgadownload
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ★ 1.1k
0
votes
8
replies
3.4k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
9.1 years ago • updated 9.0 years ago sabarinath.chandrasekharan ▴ 10
0
votes
7
replies
2.4k
views
TCGAbiolinks not downloading the 450k data
tcgabiolinks
updated 9.1 years ago by ▴ 260 • written 9.1 years ago by ▴ 200
0
votes
1
reply
1.5k
views
Error during GDCprepare
tcgabiolinks gdcprepare
updated 9.1 years ago by ▴ 270 • written 9.1 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Why the package readr can't be find?
software error tcgabiolinks readr
updated 9.1 years ago by 53k • written 9.1 years ago by • 0
1
vote
6
replies
2.7k
views
Errors in TCGAbiolinks
tcgabiolinks
updated 9.2 years ago by ▴ 260 • written 9.2 years ago by ▴ 10
0
votes
3
replies
5.3k
views
Problem in downloading data via TCGAbiolinks
tcgabiolinks tcgadownload
updated 4.4 years ago by ▴ 10 • written 9.2 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Problems running TCGAbiolinks
tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.3 years ago by • 0
1
vote
2
replies
2.0k
views
TCGAbiolinks 403 Forbidden Error
bug issue tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.3 years ago by 700
0
votes
4
replies
2.9k
views
TCGA biolinks data download
tcgabiolinks
updated 9.3 years ago by ▴ 270 • written 9.3 years ago by ▴ 10
1
vote
2
replies
1.9k
views
TCGAbiolinks download and read data error
TCGAbiolinks
updated 9.3 years ago by ▴ 270 • written 9.3 years ago by • 0
165 results • Page 3 of 4
Recent ...
Replies
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Awards • All
Popular Question to Steve Lianoglou ★ 13k
Popular Question to abaed • 0
Popular Question to ubjw24 • 0
Popular Question to Gordon Smyth 53k
Popular Question to Hervé Pagès 16k
Locations • All
WEHI, Melbourne, Australia, 11 minutes ago
San Diego, 46 minutes ago
Australia, 2 hours ago
The city by the bay, 2 hours ago
United States, 3 hours ago
Traffic: 825 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6