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EdgeR: Explaning dispersion types to newbies
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updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
Mr.RB
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Bioconductor-related papers -- special F1000Research collection for Bioc2016
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updated 8.1 years ago by
thomas.ingraham
▴ 10 • written 8.1 years ago by
Wolfgang Huber
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New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
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• 0 • written 7.9 years ago by
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Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
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Laurent Gatto
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23 months ago
Matthew Ritchie
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Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
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21 months ago
Andy Lynch
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Maria Doyle
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Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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