Bioconductor VOOM

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2.7k

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limma edger timecourse without replicate voom

written 7.5 years ago by Camila Orellana ▴ 10

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1.1k

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limmaGUI normalization limma voom Normalization

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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1.0k

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GSEA voom limma

updated 10 months ago by Gordon Smyth 50k • written 10 months ago by manuelsokolov • 0

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869

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edgeR limma voom RNASeq muscat

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

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724

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voom blocking limma

updated 7 months ago by Gordon Smyth 50k • written 7 months ago by Gerhard Thallinger ▴ 180

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647

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voom RNASeq limma

6 months ago Tyler Sagendorf ▴ 10

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608

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DEG edgeR limma voom filterByExpr

updated 5 months ago by Gordon Smyth 50k • written 5 months ago by annikagable • 0

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564

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stats r RNASeqData limma voom

6 months ago • updated 5 months ago pl23 • 0

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480

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RNASeqData limma voom PFS DGE

updated 11 months ago by James W. MacDonald 66k • written 11 months ago by manuelsokolov • 0

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290

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rna-seq duplicateCorrelation limma voom

12 days ago • updated 11 days ago Dylan.Sheerin • 0

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209

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Voom Limma WGCNA

6 weeks ago Gimena • 0

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192

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limma RNASeq voom

written 28 days ago by taur.vil • 0

12 results • Page 1 of 1

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Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

Comment: ChAMP installation issue by shepherl 3.9k

We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…

Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0

Hello everyone, I am new on this site but not a noob in R (I guess). I am facing the same problem. For me, it depends on the NOIseq plot fu…

Comment: ChAMP installation issue by Tahirah • 0

Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…

Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by James W. MacDonald 66k

Yes, you can use `limma`.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10