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Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
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Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/
If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
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Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
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In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
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arfranco
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numbers 1 to 3 represent observations and/or replicates
Control is control. The three controls are shown as Control_1, control_2 and Contr…
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