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News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.6 years ago • updated 2.0 years ago
shepherl
3.9k
7
votes
4
replies
2.2k
views
Start to End RNA-Seq with R Bioconductor
Bioconductor
Workflow
updated 2.3 years ago by
Gordon Smyth
50k • written 2.3 years ago by
sarastew1994
• 0
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 3.0 years ago
shepherl
3.9k
0
votes
2
replies
793
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 3.7 years ago by
shepherl
3.9k • written 3.7 years ago by
gnanaprakash.s
• 0
1
vote
3
replies
768
views
typo in rnaseqGene workflow vignette.
rnaseqGene
workflow
deseq2
updated 4.3 years ago by
Michael Love
41k • written 4.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
7
replies
3.0k
views
Issue installing RNA-seq workflow
software error
deseq2
workflow
rnaseqGene
updated 4.9 years ago by
Martin Morgan
25k • written 4.9 years ago by
pavan-bioconductor
• 0
2
votes
3
replies
1.0k
views
RNA-Seq Workflow Example (not "airway") for R
RNA-Seq
Workflow
updated 4.9 years ago by
Gordon Smyth
50k • written 4.9 years ago by
detroit.drive
• 0
7 results • Page
1 of 1
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Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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