Showing : acgh • reset
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plot Genome in aCGH
acgh
updated 9.6 years ago by 25k • written 9.7 years ago by • 0
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2
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4.4k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.4 years ago by • 0 • written 12.7 years ago by ★ 8.2k
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4.6k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
11.6 years ago Dan Tenenbaum ★ 8.2k
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
11.8 years ago Guest User ★ 13k
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4.6k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.1 years ago Dan Tenenbaum ★ 8.2k
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1
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1.2k
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aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ▴ 40
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2.7k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
12.2 years ago Sarah JugurnauthLittle ▴ 20
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1.5k
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
12.3 years ago Guest User ★ 13k
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0
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1.5k
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readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
12.4 years ago Guest User ★ 13k
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1
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1.5k
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Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 10
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0
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1.5k
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Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
13.0 years ago Guest User ★ 13k
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1
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1.2k
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limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 13.3 years ago by 53k • written 13.3 years ago by ▴ 10
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0
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1.5k
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agilent aCGH analysis
aCGH aCGH aCGH aCGH
13.3 years ago Guest User ★ 13k
0
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0
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1.1k
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aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
13.5 years ago Sarah JugurnauthLittle ▴ 20
0
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0
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1.3k
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aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
13.7 years ago Emilie Lalonde ▴ 10
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1
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1.4k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 14.6 years ago by ▴ 210 • written 14.6 years ago by ▴ 330
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1.4k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
15.0 years ago Adeolu Adewoye ▴ 40
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1.8k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
15.0 years ago Paul Shannon ★ 1.1k
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1
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2.0k
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how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 15.1 years ago by 21k • written 15.1 years ago by ▴ 110
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1.7k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
15.1 years ago Martin Morgan 25k
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3
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1.8k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 15.3 years ago by ▴ 550 • written 15.3 years ago by ▴ 20
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1.0k
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pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
15.6 years ago Leo Lahti ▴ 10
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2.0k
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getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
15.8 years ago Sean Davis 21k
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1.4k
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DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.8 years ago Daniel Rico ▴ 110
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1.2k
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DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.8 years ago Anguraj Sadanandam ▴ 10
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2
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1.7k
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GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 15.9 years ago by ▴ 170 • written 15.9 years ago by ▴ 10
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5
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1.6k
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failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 16.2 years ago by ★ 1.6k • written 16.2 years ago by ★ 1.1k
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1.3k
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
16.3 years ago Wolfgang RAFFELSBERGER ▴ 140
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1.2k
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NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 16.4 years ago by 21k • written 16.4 years ago by ▴ 10
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4
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2.0k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 16.6 years ago by ▴ 160 • written 16.6 years ago by ★ 1.1k
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Warning in mergeLevels
aCGH Cancer aCGH aCGH Cancer aCGH
16.7 years ago Oscar Rueda ▴ 40
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4
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1.8k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 16.9 years ago by 21k • written 16.9 years ago by ▴ 360
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3
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2.0k
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Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
17.1 years ago Patrick Aboyoun ★ 1.6k
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2.4k
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Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 17.1 years ago by ★ 7.2k • written 17.1 years ago by ▴ 300
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 17.2 years ago by ▴ 110 • written 17.2 years ago by ▴ 40
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915
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A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
17.4 years ago affy snp ▴ 640
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2
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1.5k
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CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 17.4 years ago by ★ 2.4k • written 17.4 years ago by ★ 1.9k
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3
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1.5k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
17.7 years ago pingzhao Hu ▴ 210
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1.2k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 210
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1.5k
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.8 years ago Vincent J. Carey, Jr. 6.7k
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874
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aCGH package error: MAD
aCGH aCGH aCGH aCGH
18.0 years ago affy snp ▴ 640
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4
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1.9k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.2 years ago by ▴ 230 • written 18.2 years ago by ▴ 110
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2
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1.6k
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 18.2 years ago by ▴ 40 • written 18.2 years ago by ▴ 110
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0
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867
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
18.2 years ago Lyudmila Mikhaylova ▴ 20
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1
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1.6k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
18.4 years ago Benjamin Otto ▴ 830
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951
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
18.4 years ago Ian Roberts ▴ 70
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2
replies
1.3k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
18.4 years ago Ian Roberts ▴ 70
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1
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1.6k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
18.4 years ago Steven McKinney ▴ 310
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2
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1.3k
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 18.6 years ago by 21k • written 18.6 years ago by ▴ 90
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1.2k
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aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
18.7 years ago Ramon Diaz ★ 1.1k
77 results • Page 1 of 2
Recent ...
Replies
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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