Showing : acgh • reset
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plot Genome in aCGH
acgh
updated 8.7 years ago by 25k • written 8.7 years ago by • 0
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2
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4.1k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 9.4 years ago by • 0 • written 11.7 years ago by ★ 8.2k
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0
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4.3k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.7 years ago Dan Tenenbaum ★ 8.2k
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0
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1.1k
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
10.9 years ago Guest User ★ 13k
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0
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4.3k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
11.2 years ago Dan Tenenbaum ★ 8.2k
0
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1
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1.1k
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aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 11.3 years ago by ▴ 210 • written 11.3 years ago by ▴ 40
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2.5k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
11.3 years ago Sarah JugurnauthLittle ▴ 20
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0
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1.3k
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
11.4 years ago Guest User ★ 13k
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0
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1.3k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
11.5 years ago Guest User ★ 13k
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1
reply
1.4k
views
Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 12.1 years ago by ★ 13k • written 12.1 years ago by ▴ 10
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0
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1.3k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
12.1 years ago Guest User ★ 13k
0
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1
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1.1k
views
limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 12.4 years ago by 52k • written 12.4 years ago by ▴ 10
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0
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1.4k
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agilent aCGH analysis
aCGH aCGH aCGH aCGH
12.4 years ago Guest User ★ 13k
0
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0
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982
views
aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
12.6 years ago Sarah JugurnauthLittle ▴ 20
0
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0
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1.2k
views
aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
12.8 years ago Emilie Lalonde ▴ 10
0
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1
reply
1.2k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 13.7 years ago by ▴ 210 • written 13.7 years ago by ▴ 330
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0
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1.2k
views
analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
14.1 years ago Adeolu Adewoye ▴ 40
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0
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1.6k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
14.1 years ago Paul Shannon ★ 1.1k
0
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1
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1.8k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 14.2 years ago by 21k • written 14.2 years ago by ▴ 110
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1.5k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
14.2 years ago Martin Morgan 25k
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3
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1.6k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 14.3 years ago by ▴ 550 • written 14.4 years ago by ▴ 20
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0
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936
views
pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
14.6 years ago Leo Lahti ▴ 10
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0
replies
1.9k
views
getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
14.9 years ago Sean Davis 21k
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0
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1.2k
views
DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
14.9 years ago Daniel Rico ▴ 110
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0
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1.1k
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.9 years ago Anguraj Sadanandam ▴ 10
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2
replies
1.5k
views
GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 14.9 years ago by ▴ 170 • written 14.9 years ago by ▴ 10
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5
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1.4k
views
failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 15.2 years ago by ★ 1.6k • written 15.2 years ago by ★ 1.1k
0
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0
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1.2k
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
15.3 years ago Wolfgang RAFFELSBERGER ▴ 140
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1
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1.1k
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 10
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4
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1.7k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.6 years ago by ▴ 160 • written 15.6 years ago by ★ 1.1k
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0
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1.2k
views
Warning in mergeLevels
aCGH Cancer aCGH aCGH Cancer aCGH
15.8 years ago Oscar Rueda ▴ 40
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4
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1.5k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.9 years ago by 21k • written 15.9 years ago by ▴ 360
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3
replies
1.8k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
16.2 years ago Patrick Aboyoun ★ 1.6k
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1
reply
2.2k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 300
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2
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1.4k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 16.2 years ago by ▴ 110 • written 16.2 years ago by ▴ 40
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0
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818
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A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
16.5 years ago affy snp ▴ 640
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2
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1.3k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 16.5 years ago by ★ 2.4k • written 16.5 years ago by ★ 1.9k
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3
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1.3k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.7 years ago pingzhao Hu ▴ 210
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1
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992
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.7 years ago by 21k • written 16.7 years ago by ▴ 210
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0
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1.4k
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
16.9 years ago Vincent J. Carey, Jr. 6.7k
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0
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785
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
17.1 years ago affy snp ▴ 640
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4
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1.7k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.2 years ago by ▴ 230 • written 17.2 years ago by ▴ 110
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2
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1.4k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.2 years ago by ▴ 40 • written 17.2 years ago by ▴ 110
0
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0
replies
770
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
17.3 years ago Lyudmila Mikhaylova ▴ 20
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1
reply
1.4k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
17.4 years ago Benjamin Otto ▴ 830
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0
replies
838
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
17.5 years ago Ian Roberts ▴ 70
0
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2
replies
1.2k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
17.5 years ago Ian Roberts ▴ 70
0
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1
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1.4k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
17.5 years ago Steven McKinney ▴ 310
0
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2
replies
1.1k
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.7 years ago by 21k • written 17.7 years ago by ▴ 90
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0
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1.0k
views
aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
17.8 years ago Ramon Diaz ★ 1.1k
50 results • Page 1 of 1
Recent ...
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
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C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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