Showing : acgh • reset
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plot Genome in aCGH
acgh
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
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2
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4.1k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 9.5 years ago by • 0 • written 11.8 years ago by ★ 8.2k
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4.3k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.8 years ago Dan Tenenbaum ★ 8.2k
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0
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1.2k
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calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
11.0 years ago Guest User ★ 13k
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4.3k
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
11.3 years ago Dan Tenenbaum ★ 8.2k
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1
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1.1k
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aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 11.4 years ago by ▴ 210 • written 11.4 years ago by ▴ 40
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2.5k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
11.4 years ago Sarah JugurnauthLittle ▴ 20
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1.4k
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CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
11.5 years ago Guest User ★ 13k
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0
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1.4k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
11.6 years ago Guest User ★ 13k
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1
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1.4k
views
Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 12.2 years ago by ★ 13k • written 12.2 years ago by ▴ 10
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0
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1.4k
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Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
12.2 years ago Guest User ★ 13k
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1
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1.1k
views
limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 12.5 years ago by 52k • written 12.5 years ago by ▴ 10
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0
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1.4k
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agilent aCGH analysis
aCGH aCGH aCGH aCGH
12.5 years ago Guest User ★ 13k
0
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0
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995
views
aCGH package. Plots: X axis label problems
aCGH Cancer aCGH aCGH Cancer aCGH
12.7 years ago Sarah JugurnauthLittle ▴ 20
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0
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1.2k
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aCGH segmentation with DNAcopy
aCGH probe DNAcopy aCGH aCGH probe DNAcopy aCGH
12.9 years ago Emilie Lalonde ▴ 10
0
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1
reply
1.2k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 13.8 years ago by ▴ 210 • written 13.8 years ago by ▴ 330
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0
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1.2k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
14.2 years ago Adeolu Adewoye ▴ 40
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1.7k
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seeking advice on analyzing CGH data
aCGH CGH aCGH aCGH CGH aCGH
14.2 years ago Paul Shannon ★ 1.1k
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1
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1.8k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 14.3 years ago by 21k • written 14.3 years ago by ▴ 110
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1.5k
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Bioconductor 2.7 is released
BiocViews aCGH Transcription RNASeq miRNA Microarray Normalization Network Bayesian aCGH
14.3 years ago Martin Morgan 25k
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3
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1.6k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 14.4 years ago by ▴ 550 • written 14.5 years ago by ▴ 20
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0
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948
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pint (& segmentation)
aCGH Preprocessing Cancer aCGH pint aCGH Preprocessing Cancer aCGH pint
14.7 years ago Leo Lahti ▴ 10
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0
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1.9k
views
getGEO problem
aCGH gpls aCGH GEOquery cycle aCGH gpls aCGH GEOquery cycle
15.0 years ago Sean Davis 21k
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0
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1.3k
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DNAcopy
aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall
15.0 years ago Daniel Rico ▴ 110
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1.1k
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
15.0 years ago Anguraj Sadanandam ▴ 10
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2
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1.5k
views
GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 15.0 years ago by ▴ 170 • written 15.0 years ago by ▴ 10
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5
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1.4k
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failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 15.4 years ago by ★ 1.6k • written 15.4 years ago by ★ 1.1k
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0
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1.2k
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
15.4 years ago Wolfgang RAFFELSBERGER ▴ 140
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1
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1.1k
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NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 10
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4
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1.7k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.7 years ago by ▴ 160 • written 15.7 years ago by ★ 1.1k
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1.2k
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Warning in mergeLevels
aCGH Cancer aCGH aCGH Cancer aCGH
15.9 years ago Oscar Rueda ▴ 40
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4
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1.6k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 360
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3
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1.8k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
16.3 years ago Patrick Aboyoun ★ 1.6k
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1
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2.2k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 300
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2
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1.4k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 16.3 years ago by ▴ 110 • written 16.3 years ago by ▴ 40
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827
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A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
16.6 years ago affy snp ▴ 640
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2
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1.3k
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CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 16.6 years ago by ★ 2.4k • written 16.6 years ago by ★ 1.9k
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3
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1.4k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.8 years ago pingzhao Hu ▴ 210
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1.0k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 210
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0
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1.4k
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Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.0 years ago Vincent J. Carey, Jr. 6.7k
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0
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801
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
17.2 years ago affy snp ▴ 640
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4
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1.7k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.3 years ago by ▴ 230 • written 17.3 years ago by ▴ 110
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2
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1.4k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.3 years ago by ▴ 40 • written 17.3 years ago by ▴ 110
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0
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781
views
snapCGH package for expression data?
aCGH Organism aCGH snapCGH aCGH Organism aCGH snapCGH
17.4 years ago Lyudmila Mikhaylova ▴ 20
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1
reply
1.4k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
17.5 years ago Benjamin Otto ▴ 830
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0
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853
views
aCGH package analysis - duplicate spot averaging problem
aCGH aCGH snapCGH aCGH aCGH snapCGH
17.6 years ago Ian Roberts ▴ 70
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2
replies
1.2k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
17.6 years ago Ian Roberts ▴ 70
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1
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1.5k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
17.6 years ago Steven McKinney ▴ 310
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2
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1.1k
views
snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.8 years ago by 21k • written 17.8 years ago by ▴ 90
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1.0k
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aCGH: using T instead of TRUE
aCGH Cancer aCGH aCGH Cancer aCGH
17.9 years ago Ramon Diaz ★ 1.1k
50 results • Page 1 of 1
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
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Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
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