Showing : adjusted pvalue • reset
1
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1
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1.4k
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fdrtool corrected p-value histograms look weird
pvalue adjusted pvalue fdrtool
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 20
0
votes
2
replies
1.1k
views
DESeq2, no significantly DE genes
deseq2 differential expression adjusted pvalue
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 40
9
votes
8
replies
6.2k
views
Limma Voom produces many identical adjusted p-values
limma voom adjusted pvalue
updated 7.0 years ago by 52k • written 7.0 years ago by ▴ 370
1
vote
1
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817
views
NA adjp with extremely low p value
deseq2 adjusted pvalue
updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 80
0
votes
3
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1.7k
views
DESeq2 output number of genes padj <0.1 is 0?
deseq2 adjusted pvalue
updated 7.2 years ago by 43k • written 7.2 years ago by ▴ 20
1
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1
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1.5k
views
edgeR p.adjust FDR = 0?
edger adjusted pvalue
updated 7.7 years ago by ★ 28k • written 7.7 years ago by • 0
0
votes
9
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1.9k
views
Comparing two RNASeq protocols using DESeq2
deseq2 adjusted pvalue
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 10
2
votes
10
replies
11k
views
adjusted p-values and p-values problems!
pvalue adjusted pvalue r bonferroni rna-seq
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 10
1
vote
2
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1.7k
views
Cannot re-create q-values from the p-values in the DiffTable.
cummeRbund pvalue adjusted pvalue qvalue
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 30
1
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1
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1.4k
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Not getting Adjusted p-values from multtest package
multtest methylation adjusted pvalue
updated 9.1 years ago by ▴ 110 • written 9.1 years ago by ▴ 10
5
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4
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10k
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DESeq2 produces adjusted p-values = 1
deseq2 adjusted pvalue
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ★ 1.5k
2
votes
1
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4.0k
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Difference between DESeq2 versions and explanation of betaPrior = False and padj
DESeq2 LogFC Adjusted pvalue
updated 10.0 years ago by 43k • written 10.0 years ago by • 0
12 results • Page 1 of 1
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Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
@[sandtrix][1] This is useful information. [1]: https://sandtrix.io
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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