Bioconductor Adjustment

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1.8k

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limma adjustment voom removeBatchEffect covariates

19 months ago sukeshinik5 ▴ 20

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1.3k

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DEP P.vals adjustment

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by 826599 ▴ 10

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2.9k

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cell types differential expression adjustment mixtures rnaseq

updated 8.6 years ago by Ryan C. Thompson ★ 7.9k • written 8.6 years ago by aec ▴ 90

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5.7k

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RNA rnaseq Covariate adjustment deseq

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by sjs0282 • 0

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4.5k

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limma gene expression confounding adjustment paired

10.2 years ago Loodramon • 0

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7.6k

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limma covariate continuous categorical adjustment

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by sg45653 • 0

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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k

The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0

Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …

Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0

Thank you!

Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0

Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …

Votes

A: DESeq2 - VST eliminates zero values

Comment: Normalise to a housekeeping gene in DESEq2

Comment: limpa analysis advice

C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

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