Bioconductor Adjustment

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1.7k

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limma adjustment voom removeBatchEffect covariates

17 months ago sukeshinik5 ▴ 20

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1.3k

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DEP P.vals adjustment

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by 826599 ▴ 10

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2.8k

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cell types differential expression adjustment mixtures rnaseq

updated 8.4 years ago by Ryan C. Thompson ★ 7.9k • written 8.4 years ago by aec ▴ 90

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5.6k

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RNA rnaseq Covariate adjustment deseq

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by sjs0282 • 0

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4.4k

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limma gene expression confounding adjustment paired

10.0 years ago Loodramon • 0

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7.4k

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limma covariate continuous categorical adjustment

updated 10.4 years ago by Gordon Smyth 53k • written 10.4 years ago by sg45653 • 0

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Answer: How can I correctly use phyloseq with Docker? by Kevin Blighe ★ 4.0k

The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …

Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by Kevin Blighe ★ 4.0k

Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…

Answer: Guidance Requested on GCN Network Analysis and Module Enrichment in R by Kevin Blighe ★ 4.0k

The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…

Answer: ORFik: spliced 5utr regions by Kevin Blighe ★ 4.0k

Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…

Answer: Results with PON give more variants by Kevin Blighe ★ 4.0k

Your observation aligns with the expected behavior of Mutect2 in tumor-only mode, where the panel of normals (PON) integrates into the vari…

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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

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