Showing : affy • reset
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891
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Affymetrix Yeast Tiling Arrays
Yeast affy Yeast affy
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 50
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1.5k
views
Sc03b_MR_v04 CDF package
BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast
17.2 years ago Ludo Muller ▴ 50
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2
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3.1k
views
installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 17.2 years ago by ★ 6.5k • written 17.2 years ago by ▴ 20
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1
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763
views
Compare subsets using only probesets mapped to chromosome 10
affy affy
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 20
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3
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1.3k
views
General question about library files
cdf affy cdf affy
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 60
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0
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746
views
makePdInfoPackage failure
affy affy
17.2 years ago Arkady ▴ 60
0
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1
reply
457
views
Using probes2table without affy probeset IDs
affy affy
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 10
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1
reply
1.1k
views
BiomaRt annotation for the affy6.0 snps
Annotation affy biomaRt Annotation affy biomaRt
updated 17.2 years ago by ▴ 40 • written 17.2 years ago by ▴ 320
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2
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1.8k
views
ReadAffy crashes on mac
Preprocessing affy convert affxparser affyio BUS Preprocessing affy convert affxparser
updated 17.2 years ago by ★ 1.2k • written 17.2 years ago by ▴ 40
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1
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1.5k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
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0
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1.4k
views
DNAcopy segments.p function / Scoring CNVs
affy DNAcopy affy DNAcopy
17.2 years ago marco zucchelli ▴ 320
0
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1
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1.1k
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 40
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4
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1.8k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
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16
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2.6k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 17.2 years ago by 16k • written 17.2 years ago by ▴ 200
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0
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901
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
17.2 years ago Boel Brynedal ▴ 200
0
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0
replies
1.1k
views
QC report
cdf affy affyQCReport cdf affy affyQCReport
17.3 years ago Yisong Zhen ▴ 10
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1
reply
1.5k
views
copy number for Affy 6.0
affy affy
updated 17.3 years ago by ★ 2.4k • written 17.3 years ago by ▴ 250
0
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2
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1.6k
views
makePDPackage problem? -- Affy promoter arrays
affy affxparser affy affxparser
17.3 years ago Mark Robinson ★ 1.1k
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0
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1.7k
views
gcRMA on a GeneFeatureSet from Affy MoGene 1.0 ST v1?
Annotation probe affy gcrma PROcess oligo Annotation probe affy gcrma PROcess oligo
17.3 years ago Jean Hausser ▴ 20
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votes
2
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918
views
affymetrix rat gene ST 1.0 cdf
cdf affy cdf affy
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 830
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7
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2.1k
views
Using ReadAffy with custom CDFs on tiling array data
cdf probe affy cdf probe affy
updated 17.3 years ago by ▴ 140 • written 17.3 years ago by ▴ 60
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0
replies
820
views
Link to picture: Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
17.3 years ago Boel Brynedal ▴ 200
0
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1
reply
1.1k
views
Rat Gene 1.0 ST CDF files
cdf affy cdf affy
updated 17.3 years ago by 68k • written 17.3 years ago by ▴ 20
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votes
3
replies
1.5k
views
Comparison of diff. t-statistics, Limma and rowttests
hgu133plus2 affy limma gcrma hgu133plus2 affy limma gcrma
17.3 years ago Boel Brynedal ▴ 200
0
votes
0
replies
875
views
Bioconductor Digest, Vol 65, Issue 23
cdf probe affy gcrma cdf probe affy gcrma
17.3 years ago Manhong Dai ▴ 200
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votes
4
replies
2.0k
views
Maximum number of CEL files for ReadAffy() in Affy package.
affy affy
updated 17.3 years ago by ▴ 380 • written 17.3 years ago by ▴ 10
0
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5
replies
1.8k
views
ReadAffy crashes on mac
affy BUS affy BUS
updated 17.3 years ago by ★ 2.4k • written 17.3 years ago by ★ 1.6k
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0
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1.6k
views
Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
17.3 years ago Martin Morgan 25k
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0
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1.1k
views
Problem with makePDpackage in makePlatformDesign and getCdfInfo in affy
cdf affy gcrma oligo makePlatformDesign cdf affy gcrma oligo makePlatformDesign
17.3 years ago Benjamin Lansdell ▴ 30
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1
reply
1.7k
views
Dealing with multiple probes per gene and multiple locations per probe.
Annotation GO probe affy Annotation GO probe affy
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 100
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4
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2.0k
views
aroma.affymetrix and affy - different results
Normalization affy Normalization affy
updated 17.3 years ago by ★ 2.4k • written 17.4 years ago by ▴ 380
0
votes
3
replies
1.6k
views
Ringo: Error in preprocess() with R-2.7.0, but not with R-2.5.0
probe annotate geneplotter affy vsn Ringo probe annotate geneplotter affy vsn Ringo
updated 17.4 years ago by ▴ 730 • written 17.4 years ago by ▴ 110
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0
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928
views
Pd info package affy 10K array
Microarray Annotation Network Cancer cdf probe affy Microarray Annotation Network Cancer
17.4 years ago Henrik Bengtsson ★ 2.4k
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1
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1.4k
views
KEGG2heatmap genesymbols as row names?
Annotation GO annotate affy Annotation GO annotate affy
updated 17.4 years ago by ▴ 360 • written 17.4 years ago by ▴ 220
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0
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1.4k
views
Problem with oneChannelGUI
GUI Biobase affy affyio oneChannelGUI preprocessCore GUI Biobase affy affyio
17.4 years ago Luc Vallieres ▴ 20
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0
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1.9k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
17.4 years ago Mark Cowley ▴ 400
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1
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1.1k
views
unexpected change in number of exons from/on mouse exon arrays
Annotation affy Annotation affy
updated 17.4 years ago by ▴ 190 • written 17.4 years ago by ▴ 140
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0
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1.4k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
17.4 years ago Nick Henriquez ▴ 20
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0
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1.1k
views
cross study comparison of cell populations
Cancer affy metaArray Cancer affy metaArray
17.4 years ago Max Kauer ▴ 140
0
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1
reply
955
views
Problem loading Affy
affy affy
updated 17.4 years ago by ★ 6.5k • written 17.4 years ago by ▴ 20
0
votes
2
replies
1.5k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 30
0
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4
replies
1.6k
views
Using genefilter
genefilter affy limma genefilter affy limma
17.4 years ago Nathan.Watson-Haigh@csiro.au ▴ 210
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0
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1.0k
views
Microarray analysis question
Microarray Normalization affy limma convert maanova Microarray Normalization affy limma
17.4 years ago Naomi Altman ★ 6.0k
0
votes
1
reply
740
views
reading subset of celfile and print out histograms
affy affy
updated 17.4 years ago by 21k • written 17.4 years ago by ▴ 10
0
votes
20
replies
3.9k
views
affy won't load
GUI affy GUI affy
17.4 years ago jason smith ▴ 50
0
votes
6
replies
1.5k
views
makePDpackage affy drosophila tiling 1 array
affy affy
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 430
0
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1
reply
1.1k
views
affyio version update problem
affy affyio affy affyio
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 10
0
votes
2
replies
1.7k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
17.4 years ago Glazko, Galina ▴ 350
0
votes
0
replies
663
views
affymertrix normalization: reference sample
Microarray affy Microarray affy
17.5 years ago John Lande ▴ 280
0
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2
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2.1k
views
cannot allocate vector of size 762 Mo ! One more time !
affy affyio trigger affy affyio trigger
updated 17.5 years ago by ★ 3.9k • written 17.5 years ago by ▴ 10
1,805 results • Page 15 of 37
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
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Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
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Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
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Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
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Answer: DESeq2 design for haplotype MPRA
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