Showing : affy • reset
0
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2
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1.7k
views
GSEABase how to map gene symbols to mouse EntrezId or Affy
Cancer affy Cancer affy
17.5 years ago Martin Morgan 25k
0
votes
1
reply
1.2k
views
Input to vsn or limma of genepix file missing 635 columns
Annotation Normalization Biobase affy vsn limma marray convert Annotation Normalization
updated 17.5 years ago by ▴ 30 • written 17.5 years ago by 53k
1
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4
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5.6k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure cdf probe affy Infrastructure cdf probe affy
17.5 years ago Hans-Ulrich Klein ▴ 330
0
votes
9
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2.1k
views
xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’
ChipName affy xps ChipName affy xps
updated 17.5 years ago by ★ 3.9k • written 17.5 years ago by ★ 1.4k
1
vote
2
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1.9k
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affxparser affy affxparser
17.5 years ago Shi, Tao ▴ 720
0
votes
1
reply
1.2k
views
create Affymetrix .chp file for viewing in affy Integrated Genome Browser
affy affy
updated 17.5 years ago by ★ 6.5k • written 17.5 years ago by ▴ 720
0
votes
1
reply
1.7k
views
AffyID in biomaRt?
GO drosophila2 affy biomaRt GO drosophila2 affy biomaRt
updated 17.5 years ago by ▴ 500 • written 17.5 years ago by ▴ 320
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2
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1.3k
views
Integrating hgu133a and hgu133a2
hgu133a2 hgu133a cdf affy hgu133a2 hgu133a cdf affy
17.5 years ago Chintanu ▴ 310
0
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0
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906
views
Affy EXON Array: iterPLIER or RMA
affy exonmap affy exonmap
17.5 years ago juancui ▴ 10
0
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4
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1.9k
views
observations on affyprobeminer
GO rat2302 cdf affy qvalue GO rat2302 cdf affy qvalue
updated 17.5 years ago by ▴ 10 • written 17.5 years ago by ▴ 830
0
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2
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1.0k
views
How can I see .C source code in affy package?
Genetics affy Genetics affy
updated 17.5 years ago by ★ 6.5k • written 17.5 years ago by ▴ 10
0
votes
1
reply
819
views
a question about exonmap
affy affy
updated 17.6 years ago by ★ 1.1k • written 17.6 years ago by ▴ 30
0
votes
3
replies
1.4k
views
Question about F test in limma
affy limma affy limma
17.6 years ago Lisa Mijung Chung ▴ 30
0
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0
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1.4k
views
getGene function in biomaRt
affy biomaRt affy biomaRt
17.6 years ago Sean Davis 21k
0
votes
3
replies
1.3k
views
mouse4302,db_2.0.2 in AffylmGUI
Annotation Cancer mouse4302 affy limma Annotation Cancer mouse4302 affy limma
updated 17.6 years ago by ▴ 450 • written 17.6 years ago by ★ 2.0k
0
votes
2
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2.0k
views
ReadAffy fails 64bit linux Error in .nextMethod(e1, e2) :
Annotation ExperimentData cdf affy Annotation ExperimentData cdf affy
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 20
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0
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750
views
plot.gene() with smaller key color steps?
affy affy
17.6 years ago Paul Hammer ▴ 220
0
votes
2
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1.6k
views
Error in .nextMethod(e1, e2) with updated R and bioC package on MAC OS
affy affy
17.6 years ago Anat Caspi ▴ 20
0
votes
0
replies
1.6k
views
Error in function (classes, fdef, mtable): unable to find an inherited method for function "indexProbes", for signature "exprSet", "character"
Normalization affy Normalization affy
17.6 years ago Sean Davis 21k
0
votes
1
reply
985
views
Understanding GOstats
Annotation GO affy GOstats Annotation GO affy GOstats
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 310
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1
reply
1.6k
views
calculating median expression between to identical gene names in data frame
Clustering Cancer affy Clustering Cancer affy
updated 17.7 years ago by ★ 1.8k • written 17.7 years ago by ▴ 600
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1
reply
1.2k
views
detection calls without MM probes
affy affy
updated 17.7 years ago by ▴ 30 • written 17.7 years ago by ▴ 90
0
votes
1
reply
1.5k
views
Is it possible to use RMA on Agilent Data
Organism Arabidopsis thaliana probe affy oligo Organism Arabidopsis thaliana probe affy
updated 17.7 years ago by ★ 1.3k • written 17.7 years ago by ▴ 110
0
votes
1
reply
866
views
custom CDF with GC-RMA
cdf probe affy cdf probe affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 30
0
votes
1
reply
614
views
justGCRMA() error message
probe affy probe affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 10
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2
replies
1.3k
views
gene.strip exonmap
Breast affy Breast affy
updated 17.7 years ago by ★ 1.1k • written 17.7 years ago by ▴ 220
0
votes
1
reply
1.3k
views
Normalizing two different platforms
cdf affy gcrma cdf affy gcrma
updated 17.7 years ago by ★ 6.5k • written 17.7 years ago by ▴ 80
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0
replies
977
views
ExpressionSet class and problems with phenotype and metadata matrices
Microarray Annotation Cancer hgu95av2 Biobase annotate affy Microarray Annotation Cancer
17.7 years ago Martin Morgan 25k
0
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3
replies
1.2k
views
Problem with setQCEnvironment
cdf affy cdf affy
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 40
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0
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1.3k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene 1.0 ST Array
Microarray cdf probe affy convert Microarray cdf probe affy convert
17.7 years ago Fang, Hong* ▴ 30
0
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1
reply
1.3k
views
normalize.quantil, different results, affy_1.14.1 and affy_1.16.0
affy affyio affy affyio
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 380
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4
replies
1.9k
views
Trouble installing bioconductor packages on 64 bit R on OS X Leopard
affy affy
updated 17.7 years ago by ▴ 60 • written 17.7 years ago by ▴ 100
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1
reply
1.2k
views
transferring AffyBatch object and 64 bit R
cdf affy cdf affy
updated 17.8 years ago by ▴ 730 • written 17.8 years ago by ▴ 90
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0
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666
views
Control probe
affy affy
17.8 years ago alex lam RI ▴ 310
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0
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1.5k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
17.8 years ago Vincent J. Carey, Jr. 6.7k
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1
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804
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multi-experiment multi-chip summarization
GO probe affy GO probe affy
updated 17.8 years ago by ★ 2.4k • written 17.8 years ago by ▴ 10
0
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0
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859
views
ways to measure runs of homozygosity?
SNP affy SNP affy
17.8 years ago Matthew Keller ▴ 100
0
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0
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1.4k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
17.8 years ago Holger Schwender ▴ 900
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1
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1.4k
views
Low-level analysis of custom microarrays
Microarray Normalization Cancer probe affy limma affyio Microarray Normalization Cancer
updated 17.9 years ago by ★ 13k • written 17.9 years ago by 25k
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0
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1.2k
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Low-level analysis of custom microarrays
Microarray probe affy affyio Microarray probe affy affyio
17.9 years ago Teresa Colombo ▴ 10
0
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0
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2.0k
views
limma: decideTests
limma probe affy
17.9 years ago • updated 2.8 years ago Gordon Smyth 53k
0
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0
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1.4k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
17.9 years ago Julian Lee ▴ 140
0
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0
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1.4k
views
about microarray batch effect and treatment effect
affy DOSE affy DOSE
17.9 years ago Aedin Culhane ▴ 510
0
votes
2
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1.3k
views
exonmap questions
affy PROcess exonmap affy PROcess exonmap
updated 17.9 years ago by 68k • written 17.9 years ago by ▴ 890
0
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0
replies
902
views
PCA methods for probe level data
probe affy convert probe affy convert
18.0 years ago James W. MacDonald 68k
0
votes
1
reply
878
views
GCRMA background correction for a subset of genes
affy gcrma affy gcrma
updated 18.0 years ago by ▴ 950 • written 18.0 years ago by ▴ 30
0
votes
1
reply
948
views
Affy 10K SNP arrays
SNP affy SNP affy
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 30
0
votes
0
replies
835
views
adding KEGG annotations with ABPkBuilder from E.coli
Annotation affy PROcess Annotation affy PROcess
18.0 years ago Robert Castelo ★ 3.4k
0
votes
0
replies
1.4k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
18.0 years ago Boel Brynedal ▴ 200
0
votes
0
replies
905
views
how to read in affy snp 500K arrays
affy affy
18.0 years ago pingzhao Hu ▴ 210
1,805 results • Page 16 of 37
Recent ...
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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