Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 4.0 years ago by ▴ 10 • written 4.0 years ago by • 0
1
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3
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.7 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.7 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.3k
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.7 years ago by 68k • written 14.7 years ago by ★ 1.5k
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6
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1.9k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 110
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8
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1.9k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 14.9 years ago by 68k • written 14.9 years ago by ▴ 110
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9
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2.7k
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
14.9 years ago Lorenzo Melchor ▴ 50
0
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3
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1.6k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 15.0 years ago by 68k • written 15.0 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
15.0 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.3k
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ★ 1.9k
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
15.5 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
15.9 years ago Leonor Palmeira ▴ 100
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1.5k
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
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4
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 17.2 years ago by ★ 5.5k • written 17.2 years ago by ▴ 200
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16
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2.6k
views
missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 17.2 years ago by 16k • written 17.2 years ago by ▴ 200
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QC report
cdf affy affyQCReport cdf affy affyQCReport
17.2 years ago Yisong Zhen ▴ 10
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1
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2.3k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 17.4 years ago by ▴ 400 • written 17.4 years ago by ▴ 20
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2
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 17.5 years ago by ▴ 450 • written 17.5 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
18.4 years ago Seth Falcon ★ 7.4k
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2.4k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 80
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3
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.7 years ago by ★ 1.1k • written 18.7 years ago by ▴ 270
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8
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2.3k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ★ 2.2k
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0
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.7 years ago Wu, Xiwei ▴ 350
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4
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1.8k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 830
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2
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.9 years ago by 68k • written 18.9 years ago by ▴ 890
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1
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1.3k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 19.3 years ago by 68k • written 19.3 years ago by ▴ 160
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0
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
19.5 years ago Jenny Drnevich ★ 2.2k
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
19.5 years ago Wittner, Ben ▴ 290
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4
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1.5k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
20.4 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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