Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.6 years ago by ▴ 10 • written 2.7 years ago by • 0
1
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3
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1.9k
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.3 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.3 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.1k
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 13.3 years ago by 66k • written 13.3 years ago by ★ 1.5k
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6
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1.5k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 13.4 years ago by 66k • written 13.4 years ago by ▴ 110
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8
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1.5k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 13.5 years ago by 66k • written 13.5 years ago by ▴ 110
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9
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2.1k
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
13.5 years ago Lorenzo Melchor ▴ 50
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3
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1.4k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 13.6 years ago by 66k • written 13.6 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
13.6 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.0k
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ★ 1.9k
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875
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.1 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
14.5 years ago Leonor Palmeira ▴ 100
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.8 years ago by ★ 5.5k • written 15.8 years ago by ▴ 200
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4
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1.4k
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.9 years ago by ★ 5.5k • written 15.9 years ago by ▴ 200
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16
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1.9k
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missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 15.9 years ago by 16k • written 15.9 years ago by ▴ 200
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QC report
cdf affy affyQCReport cdf affy affyQCReport
15.9 years ago Yisong Zhen ▴ 10
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1
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2.0k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 16.0 years ago by ▴ 400 • written 16.0 years ago by ▴ 20
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2
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.1 years ago by ▴ 450 • written 16.1 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
17.0 years ago Seth Falcon ★ 7.4k
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9
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1.9k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 80
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3
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 17.4 years ago by ★ 1.1k • written 17.4 years ago by ▴ 270
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8
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1.7k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 2.2k
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0
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959
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
17.4 years ago Wu, Xiwei ▴ 350
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1.4k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ▴ 830
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.5 years ago by 66k • written 17.5 years ago by ▴ 890
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1
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1.1k
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qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 17.9 years ago by 66k • written 17.9 years ago by ▴ 160
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0
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903
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.1 years ago Jenny Drnevich ★ 2.2k
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825
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
18.1 years ago Wittner, Ben ▴ 290
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4
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1.2k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
19.0 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2 by Michael Love 42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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