Showing : affyQCReport • reset
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Bioconductor 3.13 installer reports that affyQCReport is not available
Install 3.13 affyQCReport
updated 2.5 years ago by ▴ 10 • written 2.6 years ago by • 0
1
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3
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1.9k
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QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.2 years ago federico.comoglio ▴ 100
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quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.2 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.0k
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quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 13.2 years ago by 65k • written 13.2 years ago by ★ 1.5k
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6
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1.5k
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Unable to Generate QC Report for mogene10stv1
Annotation GO GUI affy PROcess affyQCReport Annotation GO GUI affy PROcess affyQCReport
updated 13.3 years ago by 65k • written 13.3 years ago by ▴ 110
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8
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1.5k
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Unable to Generate QC Report for mogene10stv1
GO affyQCReport GO affyQCReport
updated 13.4 years ago by 65k • written 13.4 years ago by ▴ 110
0
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9
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2.1k
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Error coerce in AffyQCReport
Cancer Breast affyQCReport Cancer Breast affyQCReport
13.4 years ago Lorenzo Melchor ▴ 50
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3
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1.3k
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affyQCReport with drosgenome2cdf
affyQCReport affyQCReport
updated 13.5 years ago by 65k • written 13.5 years ago by ★ 1.5k
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drosophila2cdf in simpleaffy / affyQCReport
cdf simpleaffy affyQCReport cdf simpleaffy affyQCReport
13.5 years ago Assa Yeroslaviz ★ 1.5k
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2
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1000
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Quality control on Human Affymetrix Exon microarrays
GO Cancer probe affyQCReport GO Cancer probe affyQCReport
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ★ 1.9k
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859
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.0 years ago Daniel Brewer ★ 1.9k
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.qcdef file
cdf probe affyQCReport cdf probe affyQCReport
14.4 years ago Leonor Palmeira ▴ 100
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1
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library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
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4
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1.4k
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Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
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16
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1.8k
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missing value
cdf affy affyQCReport cdf affy affyQCReport
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 200
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801
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QC report
cdf affy affyQCReport cdf affy affyQCReport
15.8 years ago Yisong Zhen ▴ 10
0
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1
reply
1.9k
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.qcdef file
cdf affyQCReport cdf affyQCReport
updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 20
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2
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876
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question on affyQCReport vignette
affyQCReport affyQCReport
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 830
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Bioconductor web page
GO Cancer tkWidgets reposTools widgetTools simpleaffy affyQCReport affyio GO Cancer
16.9 years ago Seth Falcon ★ 7.4k
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1.8k
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problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
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3
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1.0k
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 17.2 years ago by ★ 1.1k • written 17.3 years ago by ▴ 270
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8
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1.6k
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oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 2.2k
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0
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948
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
17.2 years ago Wu, Xiwei ▴ 350
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4
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1.4k
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error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ▴ 830
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2
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.4 years ago by 65k • written 17.4 years ago by ▴ 890
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1
reply
1.1k
views
qc function missing in Linux version of simpleaffy
cdf genefilter affy affydata simpleaffy affyQCReport affyio cdf genefilter affy affydata
updated 17.8 years ago by 65k • written 17.8 years ago by ▴ 160
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0
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887
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Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
18.0 years ago Jenny Drnevich ★ 2.2k
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0
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811
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simpleAffy, custom chip error
GO cdf probe gcrma simpleaffy affyQCReport GO cdf probe gcrma simpleaffy affyQCReport
18.0 years ago Wittner, Ben ▴ 290
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4
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1.2k
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problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 10
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Re: how to evaluate the arrays quality
affyQCReport affyQCReport
18.9 years ago Craig Parman ▴ 10
30 results • Page 1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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