Showing : affylmGUI • reset
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affylmGUI problem with tkcmd
affylmGUI affylmGUI
updated 19.0 years ago by ▴ 80 • written 19.0 years ago by ★ 7.4k
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895
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affylmGUI problem with tkcmd
affylmGUI affylmGUI
19.0 years ago Wonjong Moon ▴ 80
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3
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1.4k
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Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 19.1 years ago by ▴ 450 • written 19.1 years ago by ▴ 70
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limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
19.5 years ago Gordon Smyth 53k
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LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
19.5 years ago Mark Dunning ▴ 320
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1.2k
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LimmaGUI for illumina data
GUI limma affylmGUI limmaGUI GUI limma affylmGUI limmaGUI
19.6 years ago Roy Williams ▴ 10
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632
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AffylmGUI
affylmGUI affylmGUI
19.7 years ago Gordon Smyth 53k
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1.1k
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Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
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1.1k
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Access to Affy chip annotation data in affylmGUI
mouse4302 affylmGUI mouse4302 affylmGUI
updated 19.9 years ago by ★ 7.4k • written 19.9 years ago by ▴ 10
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1.0k
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FW: Question (vennDiagram vs. topTable) for AffylmGUI 1.3.0
GO limma affylmGUI GO limma affylmGUI
updated 20.2 years ago by 53k • written 20.2 years ago by ▴ 50
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954
views
Analisys with MAS5 and affyPLM
affylmGUI affylmGUI
20.4 years ago Pedro Botías ▴ 80
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3
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1.2k
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Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
20.4 years ago Seth Falcon ★ 7.4k
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973
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Error messages in affylmGUI on PC with respect to plotting
Cancer limma affyPLM affylmGUI Cancer limma affyPLM affylmGUI
20.4 years ago Richard Friedman ★ 2.0k
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880
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error message in affylmGUI on PC
Cancer affylmGUI Cancer affylmGUI
20.4 years ago Richard Friedman ★ 2.0k
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5
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1.8k
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Problem with Installing affylmGUI on MAC OS X
Cancer affylmGUI Cancer affylmGUI
20.4 years ago Richard Friedman ★ 2.0k
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0
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1.2k
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Question (vennDiagram vs. topTable) + Patch (plotTitle for vennDiagram) for AffylmGUI 1.3.0
affylmGUI affylmGUI
20.5 years ago Steffen Moeller ▴ 40
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3
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1.6k
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Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 20.5 years ago by 53k • written 20.5 years ago by ▴ 70
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693
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AffylmGUI Comparisons and Filtering
Microarray affylmGUI Microarray affylmGUI
20.6 years ago Quentin Anstee ▴ 110
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760
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Re: [Bioc-devel] Error in mget(ls(cdfenv), env = rgu34aGENENAME) : Object "rgu34aGENENAME" not found
Annotation GO affylmGUI Annotation GO affylmGUI
20.8 years ago James Wettenhall ▴ 1000
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1.1k
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Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
20.8 years ago Aaron Hamilton ▴ 30
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2
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1.2k
views
affylmGUI error when normalizing
Microarray Normalization affylmGUI Microarray Normalization affylmGUI
updated 20.8 years ago by ▴ 1000 • written 20.9 years ago by ▴ 30
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1
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798
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Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 20.8 years ago by ★ 7.4k • written 20.8 years ago by ▴ 30
0
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0
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904
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affylmGUI - feedback, questions
gcrma GeneSpring affylmGUI gcrma GeneSpring affylmGUI
20.8 years ago SteffenMöller ▴ 30
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849
views
Affymetrix CDF package
cdf affylmGUI cdf affylmGUI
20.9 years ago MShingyoji@lbl.gov ▴ 10
0
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4
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2.0k
views
tkrplot in R2.0 on Mac OS X
affylmGUI affylmGUI
updated 21.1 years ago by ▴ 1000 • written 21.1 years ago by ▴ 100
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0
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861
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affy and limma
Normalization affy affylmGUI convert Normalization affy affylmGUI convert
21.2 years ago Gordon Smyth 53k
0
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0
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815
views
affy and limma
Normalization affy affylmGUI convert Normalization affy affylmGUI convert
21.2 years ago Gareth Elvidge ▴ 10
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1
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1.4k
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Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
21.5 years ago James Wettenhall ▴ 1000
0
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0
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874
views
affylmGUI multiget
affylmGUI affylmGUI
21.5 years ago James Wettenhall ▴ 1000
0
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0
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912
views
affylmGUI fix (topTable/CDF name)
Annotation cdf affylmGUI Annotation cdf affylmGUI
21.5 years ago James Wettenhall ▴ 1000
0
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1
reply
1.3k
views
loading CEL files in affylmGUI
Annotation affylmGUI Annotation affylmGUI
updated 21.5 years ago by ▴ 1000 • written 21.5 years ago by ▴ 60
0
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3
replies
1.5k
views
Error in parse() loading affylmGUI
affylmGUI affylmGUI
updated 21.5 years ago by ▴ 1000 • written 21.5 years ago by ▴ 340
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0
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891
views
three way comparisons with affylmgui
affylmGUI affylmGUI
21.5 years ago Simon Kidd ▴ 180
0
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1
reply
954
views
affylmGUI
affylmGUI affylmGUI
updated 21.5 years ago by ▴ 1000 • written 21.5 years ago by ▴ 120
0
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1
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1.1k
views
Anopheles/malaria Affy chips
affy simpleaffy affylmGUI affy simpleaffy affylmGUI
updated 21.5 years ago by ▴ 950 • written 21.5 years ago by ▴ 510
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1.3k
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Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
21.5 years ago James Wettenhall ▴ 1000
0
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0
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964
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gcrma in affylmGUI
gcrma affylmGUI limmaGUI gcrma affylmGUI limmaGUI
21.5 years ago James Wettenhall ▴ 1000
0
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0
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1.2k
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
21.6 years ago James Wettenhall ▴ 1000
0
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1
reply
960
views
Is rma in affylmGUI different to affy rma?
affy affylmGUI affy affylmGUI
21.6 years ago Simon Kidd ▴ 180
0
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2
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1.2k
views
affylmGUI
drosgenome1 affylmGUI drosgenome1 affylmGUI
updated 21.6 years ago by ▴ 1000 • written 21.6 years ago by ▴ 180
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830
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Re: affylmGUI figures estrogen data set
GO affylmGUI GO affylmGUI
21.6 years ago James Wettenhall ▴ 1000
0
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0
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1.4k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
22.0 years ago James Wettenhall ▴ 1000
92 results • Page 2 of 2
Recent ...
Replies
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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Popular Question to shepherl 4.2k
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Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
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