Showing : affyplm • reset
1
vote
1
reply
993
views
affyPLM boxplots for subset of samples
affyPLM
updated 7.8 years ago by 65k • written 7.8 years ago by ▴ 360
1
vote
1
reply
2.3k
views
Computing NUSE and RLE scores
affyPLM RLE NUSE
updated 9.2 years ago by 21k • written 9.2 years ago by ▴ 10
0
votes
0
replies
1.2k
views
affy packages on Linux doesn't get installed
DynDoc tkWidgets affy affyPLM DynDoc tkWidgets affy affyPLM
20.4 years ago juliab@stat.berkeley.edu ▴ 10
0
votes
0
replies
843
views
Quantile Normalization on mice data
affyPLM affyPLM
20.2 years ago Yen Lin Chia ▴ 50
0
votes
2
replies
1.1k
views
AffyPLM
affyPLM affyPLM
updated 20.2 years ago by ▴ 940 • written 20.2 years ago by ▴ 50
0
votes
0
replies
924
views
affyPLM interpretation
affyPLM DOSE affyPLM DOSE
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
917
views
Quantile Normalization on mice data
Normalization Clustering probe affyPLM Normalization Clustering probe affyPLM
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.1k
views
AffyPLM
affyPLM affyPLM
20.2 years ago Arne.Muller@aventis.com ▴ 620
0
votes
0
replies
1.0k
views
Re: trouble installing "affy" package
Annotation GO Preprocessing Biobase affy affyPLM Annotation GO Preprocessing Biobase
20.1 years ago Debjani Bhowmick ▴ 30
0
votes
0
replies
878
views
Interpretation of output of AffyRNAdeg and hist commands
Microarray Regression Cancer affyPLM Microarray Regression Cancer affyPLM
20.0 years ago James W. MacDonald 65k
0
votes
0
replies
638
views
using fitPLM weights in limma analysis
affy limma affyPLM affy limma affyPLM
20.0 years ago Tom Price ▴ 20
0
votes
1
reply
1.4k
views
Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 20.0 years ago by ★ 13k • written 20.0 years ago by ▴ 810
0
votes
0
replies
631
views
Chip art from affyPLM
affyPLM affyPLM
19.9 years ago Ben Bolstad ★ 1.1k
0
votes
0
replies
618
views
Platform independent compiler switches - affyPLM problem
affyPLM affyPLM
19.9 years ago Claudio Lottaz ▴ 110
0
votes
1
reply
1.1k
views
affy package in MacOSX
affy affydata matchprobes affyPLM affy affydata matchprobes affyPLM
updated 19.8 years ago by ▴ 1000 • written 19.8 years ago by ▴ 60
0
votes
1
reply
709
views
reference on package affyPLM, fitPLM
affyPLM affyPLM
19.5 years ago Fangxin Hong ▴ 810
0
votes
2
replies
1.3k
views
gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 130
0
votes
3
replies
1.2k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ★ 1.7k
0
votes
1
reply
1.1k
views
Problems with packages: annaffy, GO, KEGG, golubEsets
GO edd annaffy affyPLM GO edd annaffy affyPLM
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 10
0
votes
0
replies
915
views
sanity check: recipe for p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
19.2 years ago Reiner Schulz ▴ 20
0
votes
0
replies
895
views
sanity check: p-value from RMA expression estimates
Normalization probe affy affyPLM Normalization probe affy affyPLM
19.2 years ago Reiner Schulz ▴ 20
0
votes
0
replies
1.0k
views
remove probes - code
cdf probe affy gcrma affyPLM cdf probe affy gcrma affyPLM
19.0 years ago Ariel Chernomoretz ▴ 380
0
votes
2
replies
1.2k
views
Re: how to evaluate the arrays quality?
GO affy affyPLM GO affy affyPLM
updated 18.9 years ago by ▴ 110 • written 18.9 years ago by ▴ 350
0
votes
0
replies
545
views
Re: Use of RMA in increasingly-sized datasets
Microarray affyPLM Microarray affyPLM
18.9 years ago Swati Ranade ▴ 60
0
votes
0
replies
732
views
RMA for bad chips
Microarray Normalization affyPLM Microarray Normalization affyPLM
18.8 years ago James W. MacDonald 65k
0
votes
3
replies
1.1k
views
AffyPLM
affyPLM affyPLM
18.8 years ago lucia ¿? ▴ 50
0
votes
0
replies
791
views
Error messages in affylmGUI on PC with respect to plotting
Cancer limma affyPLM affylmGUI Cancer limma affyPLM affylmGUI
18.8 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
905
views
Error messages in affylmGUI on PC with respect to plotting
limma affyPLM affylmGUI limma affyPLM affylmGUI
18.8 years ago Seth Falcon ★ 7.4k
0
votes
0
replies
1.3k
views
NA values
Normalization Cancer limma gcrma affyPLM limmaGUI plier Normalization Cancer limma gcrma
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
0
votes
0
replies
749
views
Limma using all probes on Affy chip
Normalization probe affy limma affyPLM Normalization probe affy limma affyPLM
18.7 years ago Gordon Smyth 50k
0
votes
6
replies
1.1k
views
What wrong with my data using LIMMA
Microarray affy limma affyPLM Microarray affy limma affyPLM
updated 18.7 years ago by ★ 1.8k • written 18.7 years ago by 50k
0
votes
3
replies
1.2k
views
LIMMA No residual using rmaPLM
Preprocessing affyPLM Preprocessing affyPLM
updated 18.6 years ago by 50k • written 18.7 years ago by ▴ 270
0
votes
0
replies
556
views
MAplot in affyPLM library
affyPLM affyPLM
18.5 years ago Simon Lin ▴ 270
0
votes
0
replies
902
views
missing function in duplicateCorrelation?
Biobase affy affydata limma affyPLM Biobase affy affydata limma affyPLM
18.4 years ago Jenny Drnevich ★ 2.2k
0
votes
1
reply
1.1k
views
RNA degradation problem
Normalization affy limma affyPLM PROcess Normalization affy limma affyPLM PROcess
updated 18.3 years ago by ▴ 810 • written 18.3 years ago by ▴ 940
0
votes
8
replies
1.9k
views
Biological replication (was RNA degradation problem)
Normalization probe affy affyPLM Normalization probe affy affyPLM
18.3 years ago Naomi Altman ★ 6.0k
0
votes
0
replies
882
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1 cdf Biobase reposTools affy gcrma affyPLM simpleaffy affyQCReport affyio cdf
17.9 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
509
views
Sam always wants more observations
probe Biobase affy affyPLM probe Biobase affy affyPLM
18.0 years ago Charles Crane ▴ 30
0
votes
0
replies
788
views
affyPLM QC
affy affyPLM affy affyPLM
18.0 years ago Tan, Ruimin ▴ 50
0
votes
0
replies
731
views
affyPLM QC Assessment problem
affy affyPLM affy affyPLM
18.0 years ago Tan, Ruimin ▴ 50
0
votes
2
replies
1.3k
views
Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 17.9 years ago by ▴ 50 • written 17.9 years ago by ▴ 20
0
votes
2
replies
1.1k
views
median of the NUSE value
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 17.9 years ago by ★ 1.2k • written 17.9 years ago by ▴ 270
0
votes
1
reply
1.3k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
votes
1
reply
877
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 10
0
votes
2
replies
875
views
loading affyPLM with R 2.4.
affyPLM affyPLM
updated 17.7 years ago by ★ 1.2k • written 17.7 years ago by ▴ 20
0
votes
0
replies
935
views
4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
17.6 years ago k. brand ▴ 420
0
votes
0
replies
961
views
method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
17.6 years ago k. brand ▴ 420
0
votes
2
replies
952
views
normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 17.6 years ago by ★ 6.5k • written 17.6 years ago by ▴ 420
0
votes
2
replies
1.1k
views
"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 17.6 years ago by ★ 1.2k • written 17.6 years ago by ▴ 420
0
votes
2
replies
2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
Awards • All
Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Locations • All
Belgium, 26 minutes ago
WEHI, Melbourne, Australia, 28 minutes ago
France, 52 minutes ago
China, 3 hours ago
India, 3 hours ago
Traffic: 607 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6