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RLE
•
reset
1
vote
1
reply
646
views
deseq2 RLE normalization
RLE
normalization
deseq2
updated 8 months ago by
ATpoint
★ 3.6k • written 8 months ago by
SH
• 0
0
votes
1
reply
697
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4
Rcpp
InteractionSet
IRanges
Rle
updated 3.5 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
lklei001
• 0
0
votes
1
reply
1.5k
views
RLE plot of DESeq2 normalisation / extract matrix of normalised counts from DESeqDataSet
deseq2
RLE
updated 3.8 years ago by
Michael Love
41k • written 3.8 years ago by
f_pardow
• 0
0
votes
2
replies
1.0k
views
Error: invalid class "VRanges" object
variantannotation
VRanges
R
Rle
updated 5.4 years ago by
Valerie Obenchain
★ 6.8k • written 5.4 years ago by
Jayendra Shinde
• 0
0
votes
0
replies
835
views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges
s4vectors
rle
rlelist
5.4 years ago
endrebak85
▴ 30
1
vote
1
reply
2.8k
views
What does the relative-log expression normalization mean in the deseq2 wrapper function ?
rle
deseq2
normalization
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
Aurora
▴ 20
1
vote
1
reply
944
views
Subsetting Rle with ORF-sequence-positions by the 3 frames
Rle
Big data
coverageByTranscript
5.6 years ago
hauken_heyken
▴ 80
7
votes
4
replies
1.4k
views
From RleList to RleArray
delayedarray
rlelist
rle
updated 6.1 years ago by
Peter Hickey
▴ 650 • written 6.1 years ago by
davide risso
▴ 930
2
votes
4
replies
1.2k
views
Generic functions for DataFrames of Rle objects ?
DataFrame
Rle
generic
expression table
updated 5 months ago by
Hervé Pagès
16k • written 6.5 years ago by
Charles Plessy
▴ 180
0
votes
3
replies
1.4k
views
Efficiently construct GRanges/IRanges from Rle vector
Rle
granges
iranges
7.2 years ago
my4
▴ 10
0
votes
1
reply
1.5k
views
Efficient coverage calculation with RleList and GRanges
granges
Rle
coverage
View
mean
updated 7.4 years ago by
Michael Lawrence
11k • written 7.4 years ago by
Christian Ruckert
▴ 170
6
votes
3
replies
2.0k
views
how does coverage() works
biostrings
coverage
rle
iranges
7.5 years ago
likeeatingpizza
▴ 10
0
votes
1
reply
1.2k
views
extract RLE normalized table
rle
normalization
table
updated 8.1 years ago by
Steve Lianoglou
13k • written 8.1 years ago by
aiko
• 0
3
votes
7
replies
1.9k
views
Add up RLEs that are in lists?
RLE
GenomicFeatures
rnaseq
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
gen
▴ 30
2
votes
6
replies
2.6k
views
Shrink or Expand RLE
RLE
iranges
granges
coverage
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
gen
▴ 30
2
votes
4
replies
1.7k
views
summing integer RLE
rle
list
irange
grangeslist
updated 8.7 years ago by
Chris Seidel
▴ 80 • written 8.7 years ago by
gen
▴ 30
1
vote
2
replies
1.0k
views
Summary statistics of RleListViews object
rle
Views
8.8 years ago
Sean Davis
21k
2
votes
5
replies
1.3k
views
making a RleViewsList object gets slow with many chromosomes
views
iranges
rle
8.8 years ago
Janet Young
▴ 740
1
vote
1
reply
2.1k
views
Computing NUSE and RLE scores
affyPLM
RLE
NUSE
updated 8.8 years ago by
Sean Davis
21k • written 8.8 years ago by
beverly893
▴ 10
0
votes
2
replies
1.1k
views
boxplot on an Rle object?
Rle
boxplot
8.8 years ago
Johannes Rainer
★ 2.0k
20 results • Page
1 of 1
Recent ...
Replies
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
Basti
▴ 740
The image is blurred, but you need to follow ATpoint advice and restart the entire analysis using a clean environment.
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
This is my running code myDMP <- champ.DMP(beta = myNormA, pheno = myLoad$pd$Sample_Group, …
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
![enter image description here][1] Thank you for your reply. I am a beginner. What I meant was that I could have obtained this image yester…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
ATpoint
★ 3.6k
I don't follow what you mean by "Normal" but in general, when you run code and it returns different results indicates that you might have o…
Comment: Deleted:No significant MVPs with a BH adjusted P-value below 0.05
by
486342583
• 0
Thank you for your reply, but for some reason, when I ran this code yesterday, it was normal
Votes
A: DSS understanding delta option and posterior probability
Comment: Ensembl down???
Answer: How should I run ssGSEA Hallmark Enrichment Analysis?
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Problem loading HDF5Array in R 4.3.2
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★ 3.6k
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