Showing : annotate • reset
0
votes
18
replies
2.1k
views
Genbank to Unigene IDs
annotate AnnBuilder annotate AnnBuilder
updated 18.1 years ago by ▴ 10 • written 18.1 years ago by 45k
0
votes
8
replies
1.0k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 15.3 years ago by ★ 7.4k • written 15.3 years ago by ★ 2.2k
0
votes
8
replies
1.1k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 15.5 years ago by ▴ 170 • written 15.5 years ago by ★ 2.9k
0
votes
10
replies
1.1k
views
AnnBuilder doesn't work on gene information ("GENENAME", "SYMBOL", etc)
Microarray Annotation probe annotate affy AnnBuilder Microarray Annotation probe annotate
updated 15.9 years ago by ★ 2.9k • written 15.9 years ago by ★ 1.5k
0
votes
6
replies
796
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ★ 1.4k
1
vote
8
replies
2.8k
views
GRanges apply functions
GO annotate GO annotate
updated 7.9 years ago by ★ 4.2k • written 7.9 years ago by ▴ 380
0
votes
7
replies
1.1k
views
annaffy annotation problem (hgu133plus2)
Annotation hgu133plus2 probe annotate AnnBuilder Annotation hgu133plus2 probe annotate
updated 17.1 years ago by ▴ 170 • written 17.1 years ago by ▴ 430
0
votes
4
replies
653
views
Recent changes to Bioconductor packages
Normalization hgu95a hgu95av2 annotate reposTools limma Normalization hgu95a hgu95av2
19.1 years ago • updated 19.0 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.0k
views
AnnBuilder/ABPkgBuilder: lots of Errors
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess bridge Annotation GO
updated 17.7 years ago by ★ 2.9k • written 17.7 years ago by ▴ 90
0
votes
3
replies
739
views
Envir. drosgenome1, GENENAME not defined?
GO drosgenome1 cdf annotate affy GO drosgenome1 cdf annotate affy
updated 16.2 years ago by ▴ 780 • written 16.2 years ago by ▴ 270
0
votes
6
replies
985
views
ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 16.6 years ago by ▴ 190 • written 16.6 years ago by ★ 7.4k
0
votes
5
replies
2.0k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 7.9 years ago by ▴ 160 • written 8.0 years ago by 59k
0
votes
5
replies
653
views
Recent changes to Bioconductor packages
SAGE annotate geneplotter graph SAGElyzer Rdbi SAGE annotate geneplotter graph SAGElyzer
19.3 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
4
replies
607
views
(no subject)
annotate reposTools annotate reposTools
updated 19.2 years ago by ★ 3.9k • written 19.2 years ago by ▴ 60
0
votes
7
replies
1.1k
views
AnnBuilder questions...
Annotation annotate AnnBuilder Annotation annotate AnnBuilder
17.2 years ago Dipl.-Ing. Johannes Rainer ▴ 430
0
votes
3
replies
971
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
11.4 years ago • updated 11.3 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.2k
views
Use ChIPpeakAnno to find two-sided nearest genes to a peak
AnnotationData annotate ChIPpeakAnno AnnotationData annotate ChIPpeakAnno
9.5 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
675
views
Missing function locuslinkQuery and locuslinkBYID in annotate 1.18.0
GO hgu95av2 Biobase annotate GO hgu95av2 Biobase annotate
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 300
0
votes
5
replies
1.2k
views
oligo package
Microarray Annotation annotate PROcess Microarray Annotation annotate PROcess
updated 9.5 years ago by 59k • written 9.5 years ago by ★ 12k
0
votes
7
replies
1.1k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
9.1 years ago Jinyan Huang ▴ 110
0
votes
4
replies
1.1k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 15.3 years ago by ★ 7.4k • written 15.3 years ago by 6.5k
0
votes
7
replies
1.1k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 14.7 years ago by ★ 7.4k • written 14.7 years ago by ★ 2.2k
0
votes
4
replies
713
views
makePDpackage
probe annotate probe annotate
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 380
0
votes
5
replies
1.0k
views
error coercing an exprSet to ExpressionSet
GO cdf Biobase annotate multtest affy limma RBGL GOstats Category affycoretools GO cdf
updated 15.5 years ago by ★ 7.4k • written 15.5 years ago by ▴ 890
0
votes
4
replies
855
views
Error while using AnnBuilder
Annotation GO Organism annotate AnnBuilder Annotation GO Organism annotate AnnBuilder
updated 16.3 years ago by ★ 7.4k • written 16.3 years ago by ▴ 160
0
votes
5
replies
1.0k
views
getBioC v1.2.22 & [R] v1.6.2
annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets reposTools affy vsn
updated 19.2 years ago by ★ 3.9k • written 19.2 years ago by ▴ 70
0
votes
4
replies
716
views
ABPkgBuilder Error; Again: Solved
Annotation GO Cancer Organism Biobase annotate AnnBuilder PROcess Annotation GO Cancer
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 250
0
votes
4
replies
841
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 15.6 years ago by 25k • written 15.6 years ago by ★ 2.2k
0
votes
4
replies
813
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 11.9 years ago by ▴ 450 • written 11.9 years ago by ▴ 810
0
votes
5
replies
1.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 15.5 years ago by ▴ 20 • written 15.6 years ago by ★ 2.2k
0
votes
8
replies
1.1k
views
mouse SNPs
SNP Annotation GO HapMap annotate SNP Annotation GO HapMap annotate
11.7 years ago Glazko, Galina ▴ 350
0
votes
4
replies
1.6k
views
smoothScatter axis limits
annotate geneplotter annotate geneplotter
updated 15.0 years ago by ★ 1.9k • written 15.0 years ago by ▴ 250
0
votes
5
replies
836
views
Manufacturer ids in lumiHumanV1
Annotation lumiHumanV1 annotate lumi Annotation lumiHumanV1 annotate lumi
updated 14.9 years ago by ★ 1.2k • written 14.9 years ago by ▴ 830
0
votes
2
replies
4.6k
views
Packages not getting installed
Microarray GO annotate Microarray GO annotate
updated 13.0 years ago by 59k • written 13.0 years ago by ▴ 90
0
votes
2
replies
1.1k
views
"AveExp" column has dissappeared from limma topTable
GO Survival annotate geneplotter affydata limma annaffy affyPLM GO Survival annotate
updated 15.1 years ago by 45k • written 15.2 years ago by ▴ 680
0
votes
3
replies
812
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 14.9 years ago by ★ 7.4k • written 14.9 years ago by ▴ 80
0
votes
4
replies
617
views
missing AnnBuilder parser
Annotation Organism annotate AnnBuilder Annotation Organism annotate AnnBuilder
updated 17.1 years ago by ★ 2.9k • written 17.1 years ago by ★ 1.3k
0
votes
3
replies
1.1k
views
Help with annotation packages
Microarray Annotation GO Anopheles gambiae probe annotate limma AnnBuilder biomaRt GO
updated 16.2 years ago by ▴ 420 • written 16.2 years ago by ▴ 460
0
votes
2
replies
737
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 15.5 years ago by 45k • written 15.5 years ago by ▴ 60
0
votes
4
replies
1.6k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 14.7 years ago by ▴ 500 • written 14.7 years ago by ★ 1.4k
0
votes
3
replies
845
views
GOstats hyperGTest question
Biobase annotate genefilter multtest graph Biobase annotate genefilter multtest graph
updated 15.3 years ago by ★ 7.4k • written 15.3 years ago by ▴ 80
0
votes
2
replies
826
views
AnnBuilder problem
Organism annotate AnnBuilder Organism annotate AnnBuilder
updated 14.8 years ago by 25k • written 14.8 years ago by ▴ 130
0
votes
2
replies
787
views
Annotate package
Microarray annotate Microarray annotate
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 130
0
votes
2
replies
1.2k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 7.7 years ago by ▴ 490 • written 7.7 years ago by 1.5k
0
votes
2
replies
420
views
Error using ABPkgBuilder?
Microarray annotate Microarray annotate
15.8 years ago Simon, Reinhard CIP ▴ 50
0
votes
2
replies
697
views
yeastCC installs ok, but won't load; R2.0.1
Biobase annotate Biobase annotate
17.3 years ago JDCGo@aol.com ▴ 30
0
votes
2
replies
889
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
15.8 years ago Jenny Drnevich ★ 2.2k
0
votes
2
replies
846
views
problem with latest version of graph
GO annotate genefilter multtest affy graph Rgraphviz RBGL GOstats affyio affycoretools
16.0 years ago Kimpel, Mark W ▴ 890
0
votes
2
replies
584
views
error in installing Bioconductor development packages
Biobase annotate genefilter reposTools affy Biobase annotate genefilter reposTools affy
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 10
0
votes
5
replies
1.2k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 15.4 years ago by ★ 7.4k • written 15.4 years ago by ▴ 450
50 results • Page 1 of 1
Recent ...
Replies
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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