Showing : annotate • reset
6
votes
5
replies
14k
views
Installation of package DESeq2
deseq2 rcurl annotate genefilter geneplotter
updated 7.3 years ago by 25k • written 7.3 years ago by ▴ 10
5
votes
2
replies
10k
views
Probe to gene id conversion
annotate biomart probe to gene id
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 20
4
votes
3
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1.5k
views
SingleCellExperiment: Edit cluster IDs in colLabels
scran Clustering SingleCellExperiment annotate cluster
updated 21 months ago by 65k • written 21 months ago by ▴ 10
3
votes
6
replies
2.6k
views
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
annotation microarray annotate annotationforge
7.2 years ago MOD • 0
3
votes
1
reply
7.0k
views
Annotation for a GEO data set
Annotation annotate GEOquery Annotation annotate GEOquery
updated 14.1 years ago by 21k • written 14.2 years ago by ▴ 20
3
votes
5
replies
5.1k
views
getBM returns shorter vectors than values
annotate biomaRt oligo annotate biomaRt oligo
updated 10.6 years ago by ▴ 540 • written 10.6 years ago by ▴ 380
2
votes
1
reply
1.0k
views
Use matchPattern for large DNAStrings
biostrings annotate
updated 7.9 years ago by 16k • written 7.9 years ago by ▴ 40
2
votes
2
replies
1.8k
views
BLAST export library 'annotate'
blast annotate biostrings export fasta
9.5 years ago b.stielow • 0
2
votes
1
reply
645
views
The best pacakge to annotate a set of regions
annotate
updated 3.5 years ago by 65k • written 3.5 years ago by ▴ 20
2
votes
1
reply
1.3k
views
HTqPCR- gene names not maintained in limmaCtData
annotate ddCt HTqPCR annotate ddCt HTqPCR
10.2 years ago Cornwell, Adam ▴ 110
1
vote
2
replies
2.6k
views
mapping mouse ENSEMBL ids to human gene symbol
Annotation AnnotationDbi annotate
updated 2.8 years ago by 65k • written 2.8 years ago by • 0
1
vote
2
replies
1.6k
views
about library(Homo.sapiens) from TxDb.Hsapiens.UCSC.hg18.knownGene
annotate
9.4 years ago Bogdan ▴ 670
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate blastSequences BLAST https
updated 7.6 years ago by 25k • written 7.6 years ago by • 0
1
vote
8
replies
3.7k
views
GRanges apply functions
GO annotate GO annotate
updated 9.9 years ago by ★ 4.2k • written 9.9 years ago by ▴ 380
1
vote
2
replies
3.4k
views
mm10 goseq supported genome
annotate goseq annotate goseq
updated 11.2 years ago by ▴ 310 • written 11.2 years ago by ▴ 140
0
votes
4
replies
1.3k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 13.8 years ago by ▴ 450 • written 13.8 years ago by ▴ 810
0
votes
2
replies
5.1k
views
Packages not getting installed
Microarray GO annotate Microarray GO annotate
updated 15.0 years ago by 65k • written 15.0 years ago by ▴ 90
0
votes
0
replies
703
views
AnnBuilder package: problem with basefile type of "refseq" or "gbNRef"
Annotation probe annotate AnnBuilder Annotation probe annotate AnnBuilder
17.8 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.2k
views
confusion about nomenclature of illumina annotationpackages
BiocViews Annotation Cancer Mus musculus illuminaHumanv1 illuminaHumanv2 probe annotate
15.8 years ago Lynn Amon ▴ 280
0
votes
4
replies
2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.7 years ago by ★ 1.4k
0
votes
3
replies
1.4k
views
Help with annotation packages
Microarray Annotation GO Anopheles gambiae probe annotate limma AnnBuilder biomaRt GO
updated 18.1 years ago by ▴ 420 • written 18.1 years ago by ▴ 460
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 19.5 years ago by ★ 5.5k • written 19.5 years ago by ▴ 100
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.4 years ago by ▴ 190 • written 17.4 years ago by ★ 2.9k
0
votes
0
replies
2.1k
views
Welcome
Biobase annotate Biobase annotate
22.4 years ago rgentleman ★ 5.5k
0
votes
1
reply
1.1k
views
tkctk widgets
GUI annotate affy GUI annotate affy
updated 22.1 years ago by ★ 2.9k • written 22.1 years ago by ★ 5.5k
0
votes
0
replies
1.5k
views
peer review process/DATE CORRECTION
Biobase annotate edd genefilter geneplotter rhdf5 multtest ROC tkWidgets affy AnnBuilder
22.1 years ago Vincent J. Carey, Jr. 6.7k
0
votes
2
replies
929
views
bug in getBioC.R
annotate genefilter annotate genefilter
updated 22.0 years ago by ▴ 530 • written 22.0 years ago by ★ 1.4k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
0
votes
0
replies
824
views
Alert: Up coming changes to annotate
Annotation annotate Annotation annotate
21.8 years ago John Zhang ★ 2.9k
0
votes
1
reply
833
views
mgu74av2
Annotation Cancer mgu74a mgu74av2 annotate Annotation Cancer mgu74a mgu74av2 annotate
updated 21.4 years ago by ★ 2.9k • written 21.4 years ago by ▴ 10
0
votes
0
replies
787
views
BioConductor beginner needing to annotate clones
Microarray GUI annotate Microarray GUI annotate
20.4 years ago Law, Annie ▴ 70
0
votes
2
replies
1.8k
views
Bioconductor Digest, Vol 138, Issue 27
annotate biovizBase ggbio UniProt.ws Pbase annotate biovizBase ggbio UniProt.ws Pbase
updated 9.7 years ago by ▴ 490 • written 9.7 years ago by 1.6k
0
votes
4
replies
1.7k
views
[R-SIG-Mac] Mac os x graphviz-Rgraphviz problem
Biobase annotate geneplotter graph Rgraphviz BUS Biobase annotate geneplotter graph BUS
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 6.5k
0
votes
5
replies
2.6k
views
Issues about how to filter and annotate the MoGene-2_0-st and MoEx-1_0-st-v1 array probe sets
Annotation probe annotate annaffy oligo ReportingTools Annotation probe annotate annaffy
updated 9.8 years ago by ▴ 160 • written 9.9 years ago by 65k
0
votes
0
replies
1.3k
views
Error in makeOrgPackageFromNCBI
GO OrgDb annotate GOstats GO OrgDb annotate GOstats
10.9 years ago Chris Whelan ▴ 60
0
votes
5
replies
1.7k
views
Rgraphviz problem
annotate graph Rgraphviz annotate graph Rgraphviz
updated 17.3 years ago by ★ 7.4k • written 17.3 years ago by ▴ 450
0
votes
0
replies
1.1k
views
UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
18.6 years ago Shi, Tao ▴ 720
0
votes
0
replies
876
views
PSB 2004 - call for papers
annotate annotate
20.9 years ago Wang, Hui ▴ 170
0
votes
1
reply
870
views
Golub example from Gentleman and Carey
Annotation annotate genefilter Annotation annotate genefilter
updated 20.9 years ago by 6.7k • written 20.9 years ago by ▴ 150
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer Biobase annotate edd geneplotter multtest tkWidgets affydata vsn graph hexbin
updated 20.9 years ago by ★ 2.9k • written 20.9 years ago by ▴ 130
0
votes
1
reply
724
views
How to plot the edge with number in Rgraphviz?
annotate annotate
updated 20.7 years ago by ★ 3.9k • written 20.7 years ago by ▴ 80
0
votes
1
reply
1.0k
views
Querying PubMed Database
hgu95av2 rae230a annotate affy affydata hgu95av2 rae230a annotate affy affydata
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 60
0
votes
0
replies
644
views
URLs in annotate
annotate annotate
20.5 years ago Sean Davis 21k
0
votes
1
reply
1.1k
views
Annotating yeast ORFs with GO and KEGG
GO Yeast annotate Category GO Yeast annotate Category
updated 20.5 years ago by ▴ 70 • written 20.5 years ago by ▴ 80
0
votes
1
reply
720
views
Re: annotate / get
rgu34a annotate rgu34a annotate
updated 21.0 years ago by ★ 2.9k • written 21.0 years ago by ▴ 50
0
votes
0
replies
1.1k
views
Re: Annotate clones Bioconductor beginner
Microarray Annotation GUI annotate widgetTools AnnBuilder Microarray Annotation GUI
20.4 years ago John Zhang ★ 2.9k
0
votes
18
replies
3.6k
views
Genbank to Unigene IDs
annotate AnnBuilder annotate AnnBuilder
updated 20.0 years ago by ▴ 10 • written 20.0 years ago by 50k
0
votes
0
replies
691
views
A summary of answers to get affyid from locusid
annotate annotate
20.0 years ago Ainong Zhou ▴ 20
0
votes
0
replies
735
views
Problem with obtaining annotation of mgu74av2 chip
Cancer mgu74av2 probe annotate annaffy Cancer mgu74av2 probe annotate annaffy
19.9 years ago Richard Friedman ★ 2.0k
0
votes
2
replies
2.2k
views
locateVariants - error with GRanges query?
annotate annotate
11.4 years ago Lescai, Francesco ▴ 380
50 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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