Showing : annotationdbi • reset
0
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818
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Error in AnnotationDbi package - makeProbePackage
cdf limma AnnotationDbi cdf limma AnnotationDbi
updated 14.4 years ago by ★ 6.5k • written 14.4 years ago by ▴ 20
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2.2k
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Having trouble with new brainarray CDF
Microarray Annotation AnnotationData AffymetrixChip hgu133a2 cdf probe graph AnnotationDbi
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 100
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[Course] CSAMA 2011: Computational Statistics for Genome Biology (Ninth Edition)
Sequencing Microarray Alignment Annotation Clustering Cancer Biostrings AnnotationDbi
14.5 years ago stefano iacus ▴ 430
0
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2
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hgu133plus2hsentrezgprobe install problem
GO Cancer AnnotationDbi GO Cancer AnnotationDbi
updated 14.5 years ago by 6.7k • written 14.5 years ago by ▴ 20
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1
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1.2k
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Use of createSimpleBimap
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
updated 14.6 years ago by ★ 4.2k • written 14.6 years ago by ★ 1.1k
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1
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1.1k
views
How to make a probe package with the GPL1073.probe file from GEO.
cdf probe affy convert AnnotationDbi cdf probe affy convert AnnotationDbi
updated 14.7 years ago by ★ 4.1k • written 14.7 years ago by ▴ 10
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1
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852
views
ToggleProbe() and Arabidopsis annotation file ath1121501.db.
ath1121501 probe AnnotationDbi ath1121501 probe AnnotationDbi
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ▴ 60
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1
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1.1k
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building annotation package for porcine
Annotation Cancer ChipName genefilter limma AnnotationDbi Annotation Cancer ChipName
updated 14.9 years ago by ★ 7.2k • written 15.0 years ago by ▴ 270
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Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
15.0 years ago James W. MacDonald 68k
0
votes
1
reply
803
views
Problem with AnnotationDbi::loadAnnDbPkgIndex()
AnnotationDbi AnnotationDbi
15.2 years ago cstrato ★ 3.9k
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0
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1.5k
views
Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism probe biocViews AnnotationDbi BiocViews GO
15.4 years ago Marc Carlson ★ 7.2k
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Building AnnotationDbi Packages - Problems when using makeAnnDbPkg
BiocViews Genetics Annotation GO Organism biocViews AnnotationDbi BiocViews BiocViews GO
15.4 years ago Julian Lee ▴ 10
0
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1
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1.1k
views
multicore package and AnnotationDbi
GO rat2302 AnnotationDbi GO rat2302 AnnotationDbi
updated 15.6 years ago by 6.7k • written 15.6 years ago by ▴ 10
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0
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882
views
AnnotationDbi
Annotation affy AnnotationDbi Annotation affy AnnotationDbi
15.7 years ago Marc Carlson ★ 7.2k
0
votes
1
reply
934
views
GOstats testing using EntrezGene IDs not in chip-specific annotation package?
GO zebrafish probe affy GOstats AnnotationDbi GO zebrafish probe affy GOstats
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ★ 2.0k
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views
AnnotationDbi
Annotation affy AnnotationDbi Annotation affy AnnotationDbi
15.7 years ago John Lande ▴ 280
0
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3
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1.6k
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
GO Biobase annotate PROcess GOstats Category AnnotationDbi GO Biobase annotate PROcess
updated 15.8 years ago by ★ 7.4k • written 15.8 years ago by ★ 3.4k
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Probeid to GOTerms... from AnnotationDBI?
GO convert AnnotationDbi GO convert AnnotationDbi
updated 15.8 years ago by ★ 7.2k • written 15.8 years ago by ★ 1.1k
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1.2k
views
how to get gene list after hyperGTest (Yue, Chen - BMD)
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
15.8 years ago Bucher Elmar ▴ 80
0
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2
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2.0k
views
Bioconductor Digest, Vol 82, Issue 20
Annotation Pathways affy GOstats Category AnnotationDbi Annotation Pathways affy GOstats
updated 15.8 years ago by ▴ 70 • written 15.8 years ago by ▴ 60
0
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2
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1.8k
views
annotationDbi error
AnnotationDbi AnnotationDbi
updated 15.9 years ago by 6.7k • written 15.9 years ago by ▴ 20
0
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1
reply
1.4k
views
building an annotation library from scratch
miRNA Annotation Organism db0 AnnotationDbi microRNA miRNA Annotation Organism db0
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 610
0
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0
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views
building an annotation library from scratch
miRNA Annotation db0 AnnotationDbi miRNA Annotation db0 AnnotationDbi
16.0 years ago Guido Hooiveld ★ 4.1k
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934
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[R] Is there a package similar to mogene10stprobeset.dbby for Affymetrix Exon Arrays?
Annotation cdf AnnotationDbi Annotation cdf AnnotationDbi
16.0 years ago Groot, Philip de ▴ 630
0
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1
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925
views
[R] Is there a package similar to mogene10stprobeset.db by for Affymetrix Exon Arrays?
Annotation AnnotationDbi Annotation AnnotationDbi
updated 16.0 years ago by ▴ 950 • written 16.0 years ago by ▴ 570
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4
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1.4k
views
AnnotationDBI
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 16.1 years ago by ★ 7.2k • written 16.1 years ago by ▴ 50
0
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3
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1.3k
views
gcrma using deprecated package
probe matchprobes AnnotationDbi probe matchprobes AnnotationDbi
16.1 years ago Rullmann, J.A.C. Ton ▴ 40
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3
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1.2k
views
The usage of ls("package:hgu95av2.db") shown in AnnotationDbi.pdf
AnnotationDbi AnnotationDbi
updated 16.2 years ago by 21k • written 16.2 years ago by ▴ 950
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2
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1.2k
views
Building an annotation data package - not Affymetrix
AnnotationDbi AnnotationDbi
16.2 years ago Lavinia Gordon ▴ 480
0
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3
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1.9k
views
Error in AnnotationDbi 1.7.8
AnnotationDbi AnnotationDbi
updated 16.2 years ago by ▴ 570 • written 16.2 years ago by ▴ 150
0
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2
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2.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 20
0
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0
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1.7k
views
mget() error with NA values
Microarray Annotation hgu133plus2 hgu95av2 AnnotationDbi Microarray Annotation hgu133plus2
16.4 years ago James W. MacDonald 68k
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1
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1.3k
views
hyperGTest, different Results using different annotation packages
Annotation GO AnnotationDbi Annotation GO AnnotationDbi
updated 16.5 years ago by ★ 7.2k • written 16.5 years ago by ▴ 20
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0
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970
views
GOstats Annotation Package
Microarray Annotation GO GOstats topGO AnnotationDbi Microarray Annotation GO GOstats
16.6 years ago Jörg ▴ 40
2
votes
5
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2.0k
views
building a new annotation
Annotation AnnBuilder AnnotationDbi Annotation AnnBuilder AnnotationDbi
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 10
0
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7
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2.5k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 16.6 years ago by ▴ 630 • written 16.6 years ago by ▴ 370
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0
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1.0k
views
Creating annotation packages
miRNA Annotation AnnBuilder AnnotationDbi miRNA Annotation AnnBuilder AnnotationDbi
16.6 years ago Gábor Csárdi ▴ 60
0
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3
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1.4k
views
Gostats and custom list
Annotation Yeast convert GOstats AnnotationDbi Annotation Yeast convert GOstats
updated 16.6 years ago by ★ 7.2k • written 16.6 years ago by ▴ 50
0
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2
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1.6k
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Can't load the arabidopsis.db annotation package created in AnnotationDbi
Annotation AnnotationDbi Annotation AnnotationDbi
16.9 years ago Groot, Philip de ▴ 630
0
votes
2
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1.8k
views
Error when trying to build a package that needs to import GO.db, GOstats, ath1121501.db packages
Annotation GO Cancer ath1121501 AnnotationDbi BHC Annotation GO Cancer ath1121501 BHC
updated 17.0 years ago by ▴ 60 • written 17.0 years ago by 25k
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1
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2.0k
views
problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 17.0 years ago by 16k • written 17.0 years ago by ▴ 830
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5
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2.0k
views
problem with Category package and custom annotationDbi
Annotation Category AnnotationDbi Annotation Category AnnotationDbi
updated 17.0 years ago by ★ 5.5k • written 17.0 years ago by ▴ 830
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1
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1.7k
views
ACCNUM match zero using AnnotationDBI package
GO ChipName AnnBuilder AnnotationDbi GO ChipName AnnBuilder AnnotationDbi
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 120
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2
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1.7k
views
GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.1 years ago by ▴ 220 • written 17.1 years ago by ★ 7.2k
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votes
1
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1.7k
views
GSEABase error in parsing msigdb_v2.5.xml
GO Infrastructure hgu95av2 Biobase Ruuid AnnotationDbi GO Infrastructure hgu95av2 Biobase
updated 17.4 years ago by 25k • written 17.4 years ago by ▴ 130
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0
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821
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AnnonationDbi inteface with RApache
hgu95av2 AnnotationDbi hgu95av2 AnnotationDbi
17.4 years ago Francesco Favero ▴ 30
0
votes
2
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1.9k
views
agilent zebrafish array annotation
Annotation zebrafish AnnBuilder PROcess AnnotationDbi Annotation zebrafish AnnBuilder
17.5 years ago Georg Otto ▴ 510
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4
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2.7k
views
Installing beadarray
annotate geneplotter beadarray AnnotationDbi annotate geneplotter beadarray AnnotationDbi
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 270
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2
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1.5k
views
AnnotationDbi package only available for R 2.6.0 or higher version?
Annotation annotate AnnBuilder AnnotationDbi Annotation annotate AnnBuilder AnnotationDbi
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 450
199 results • Page 4 of 4
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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