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annotationtools
•
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0
votes
2
replies
343
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Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 5 months ago by
ATpoint
★ 4.0k • written 5 months ago by
yw24418
• 0
0
votes
1
reply
375
views
Which species does GO.db use
GO.db
annotationTools
updated 9 months ago by
Lluís Revilla Sancho
▴ 730 • written 9 months ago by
youngleel
• 0
0
votes
3
replies
740
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 18 months ago by
James W. MacDonald
65k • written 18 months ago by
jt.cathey
• 0
0
votes
0
replies
780
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.4 years ago
Shane
• 0
2
votes
10
replies
2.3k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.5 years ago by
Guido Hooiveld
★ 3.9k • written 2.5 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.1k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.2 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
niyamurry
• 0
1
vote
3
replies
1.2k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.3 years ago by
James W. MacDonald
65k • written 6.3 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.5k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 14.7 years ago by
Brad Ander
▴ 20 • written 14.7 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.2k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 14.9 years ago by
Alexandre Kuhn
▴ 20 • written 14.9 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
980
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
15.8 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
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Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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