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annotationtools
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reset
0
votes
2
replies
480
views
Fail to annotate chromosome data to single cell sequencing data obtained from cellranger
AnnotationHubSoftware
SingleCellData
annotationTools
updated 8 months ago by
ATpoint
★ 4.2k • written 8 months ago by
yw24418
• 0
0
votes
1
reply
490
views
Which species does GO.db use
GO.db
annotationTools
updated 12 months ago by
Lluís Revilla Sancho
▴ 730 • written 12 months ago by
youngleel
• 0
0
votes
3
replies
833
views
Error with AnnotationTrack(gene, name = "Gene Model") part 3 in edX advanced bioconductor
annotationTools
updated 21 months ago by
James W. MacDonald
66k • written 21 months ago by
jt.cathey
• 0
0
votes
0
replies
899
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
2.7 years ago
Shane
• 0
2
votes
10
replies
2.5k
views
Getting Bioconductor genome wide annotation for Candida auris
AnnotationFilter
annotationTools
AnnotationHub
AnnotationData
updated 2.8 years ago by
Guido Hooiveld
★ 4.0k • written 2.8 years ago by
Javan Okendo
• 0
0
votes
2
replies
1.2k
views
Error log when I use biomaRt getBM
biomaRt
annotationTools
updated 3.5 years ago by
Mike Smith
★ 6.5k • written 3.5 years ago by
niyamurry
• 0
1
vote
3
replies
1.3k
views
Different microarrays annotations provided by toTable and annotateEset functions
microarray
annotation
annotationdbi
affycoretools
annotationtools
updated 6.5 years ago by
James W. MacDonald
66k • written 6.5 years ago by
eleonoregravier
▴ 70
0
votes
4
replies
1.6k
views
Annotation Tools package
probe
annotationTools
probe
annotationTools
updated 15.0 years ago by
Brad Ander
▴ 20 • written 15.0 years ago by
Yingfang Tian
▴ 20
0
votes
1
reply
1.3k
views
Annotation Tools package
GO
mouse430a2
probe
convert
annotationTools
GO
mouse430a2
probe
convert
annotationTools
updated 15.1 years ago by
Alexandre Kuhn
▴ 20 • written 15.1 years ago by
Giusy Della Gatta
▴ 50
0
votes
0
replies
1.0k
views
annotationTools incorrect use of ortholog
annotationTools
annotationTools
16.0 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
10 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
▴ 180
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Michael Love
42k
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Leonardo Collado Torres
★ 1.1k
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Gordon Smyth
51k
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