Bioconductor Ashr

Showing : ashr • reset

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1.5k

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DESeq2 apeglm DESeq ApeGLM Ashr

updated 2.6 years ago by Michael Love 43k • written 2.6 years ago by Ndimensional ▴ 20

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1.9k

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Ashr LFCShrinkage IHW DESeq2

4.1 years ago Bex • 0

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2.4k

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ashr DESeq2 apeglm

updated 4.4 years ago by Michael Love 43k • written 4.5 years ago by Guandong Shang ▴ 40

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1.4k

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ashr DESeq2 lfcShrink svalue

4.9 years ago Enrico • 0

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1.3k

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deseq2 ashr

5.4 years ago da.de ▴ 30

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2.2k

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deseq2 ashr rna-seq

5.8 years ago Alex • 0

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ashr

5.8 years ago kavator ▴ 30

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3.2k

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ashr Deseq2 lfcThreshold

updated 4.4 years ago by Michael Love 43k • written 5.8 years ago by Iryna • 0

8 results • Page 1 of 1

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Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0

In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …

Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20

Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?

Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0

Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…

Comment: Error message that there is no package called Biobase by DamionLedner99 • 0

thanks for sharing!!! https://cran.r-project.org/

Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0

Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…

Votes

Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2

Comment: Are transformed values from rlog /vst log2 normalized counts?

Answer: Are transformed values from rlog /vst log2 normalized counts?

A: DESeq2 normalization vs VST vs rlog

Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline

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Teacher to Michael Love 43k

Supporter to fl ▴ 20

Popular Question to James W. MacDonald 68k