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aspli
•
reset
0
votes
0
replies
63
views
I am trying to detect alternative splicing.
ASpli
6 days ago
Sebashish
• 0
0
votes
0
replies
216
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
8 weeks ago
vipul14
• 0
5
votes
6
replies
833
views
ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
martin.grigorov
▴ 10
0
votes
1
reply
641
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors
Aspli
updated 14 months ago by
Sophie
• 0 • written 15 months ago by
salvocomplicazioni1
• 0
0
votes
3
replies
3.3k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 7 months ago by
andresrabinovich
• 0 • written 18 months ago by
thithusuong.nguyen
• 0
0
votes
0
replies
605
views
ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli
alterna
AlternativeSplicing
2.2 years ago
hamza_karakurt
▴ 50
0
votes
1
reply
1.6k
views
ASpli: Error in h(simpleError(msg, call))
ASpli
updated 21 months ago by
lincango_marco
• 0 • written 2.7 years ago by
Dmitri
• 0
6
votes
10
replies
1.7k
views
ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 2.6 years ago by
Ines
• 0 • written 2.9 years ago by
Emma
▴ 20
1
vote
3
replies
1.0k
views
ASpli error message
ASpli
updated 2.2 years ago by
hamza_karakurt
▴ 50 • written 3.0 years ago by
stephen66
▴ 50
1
vote
11
replies
1.9k
views
Aspli: error with gbCounts
Aspli
ASpli
3.1 years ago • updated 3.0 years ago
jbono
▴ 10
0
votes
1
reply
584
views
function plotgenomicregions does not appear in the aspli package installed in windows
software error
aspli
plotgenomicregions
windows
4.0 years ago
joanmarquez21
• 0
0
votes
1
reply
791
views
ASpli package function plotGenomicRegions fails in windows
ASpli
plotGenomicRegions
updated 3.7 years ago by
emancini
▴ 50 • written 4.8 years ago by
mgdrnl
• 0
3
votes
2
replies
1.0k
views
ASpli readCounts never ends!
aspli
readCounts
rna-seq
alternative splicing
AS
5.2 years ago
fernandalpcosta
▴ 10
0
votes
0
replies
888
views
ASpli AsDiscover error
R
alternative splicing
ASpli
AsDiscover
5.3 years ago
abdul rawoof
▴ 60
0
votes
0
replies
936
views
ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq
alternative splicing
ASpli
5.4 years ago
nicolas.guyon2
• 0
0
votes
0
replies
812
views
ASPLI (RNAseq AS) R package error
rnaseq
ASPLI
5.8 years ago
dina.hesham139
• 0
0
votes
0
replies
1.0k
views
Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli
rstudio
5.9 years ago
arphatak
• 0
0
votes
1
reply
886
views
Splicing analysis with ASpli
ASpli
updated 6.1 years ago by
Dario Strbenac
★ 1.5k • written 6.1 years ago by
jovel_juan
▴ 30
2
votes
2
replies
1.4k
views
ASpli ERROR during the counting step
ASpli
rnaseq
updated 6.1 years ago by
hojka.anna
▴ 10 • written 6.4 years ago by
daniele.ottaviani
▴ 10
19 results • Page
1 of 1
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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