Showing : assign • reset
1
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3
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1.3k
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Limma and Names Assignment
ASSIGN ASSIGN
written 12.6 years ago by ▴ 760
0
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1
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1.3k
views
Bootstrapping paired samples and tiny groups
ASSIGN ASSIGN
updated 13.6 years ago by ★ 6.0k • written 13.7 years ago by ▴ 830
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2
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1.1k
views
LIMMA: how to assign file name
limma ASSIGN limma ASSIGN
updated 5.3 years ago by 0 • written 19.0 years ago by ▴ 180
0
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1
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933
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Re: order in affy for R
probe affy ASSIGN probe affy ASSIGN
updated 21.9 years ago by ▴ 640 • written 21.9 years ago by ★ 2.3k
0
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1
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1.6k
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Problems with url/download and http_proxy
Biobase annotate edd geneplotter tkWidgets ASSIGN Biobase annotate edd geneplotter
updated 21.9 years ago by ▴ 50 • written 21.9 years ago by ▴ 460
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0
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1.7k
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RE: [R] Problems with url/download and http_proxy
ASSIGN ASSIGN
21.9 years ago Warnes, Gregory R ▴ 460
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0
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613
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library versions problem
ASSIGN ASSIGN
20.0 years ago Rob Dunne ▴ 230
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0
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818
views
Re: LIMMA
Normalization BRAIN ASSIGN Normalization BRAIN ASSIGN
20.9 years ago Gordon Smyth 50k
0
votes
1
reply
786
views
mean of individual rows for subsets of columns in an ExprSet
ASSIGN ASSIGN
updated 20.7 years ago by 6.7k • written 20.7 years ago by ▴ 280
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0
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595
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Re: flags?
ASSIGN ASSIGN
20.4 years ago Gordon Smyth 50k
0
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0
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734
views
error while running RMA
ASSIGN ASSIGN
20.3 years ago Jeff Lande ▴ 110
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0
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895
views
Class discovery options?
affy ASSIGN affy ASSIGN
20.1 years ago Paul Boutros ▴ 340
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1
reply
3.6k
views
how deal with multiplicate affy probes?
Alignment mgu74av2 probe affy ASSIGN Alignment mgu74av2 probe affy ASSIGN
updated 20.0 years ago by ★ 5.5k • written 20.0 years ago by ▴ 50
0
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3
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1.0k
views
comparing data frames
affy ASSIGN affy ASSIGN
updated 20.0 years ago by ★ 1.8k • written 20.0 years ago by ▴ 300
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1
reply
848
views
scatter plot
ASSIGN ASSIGN
updated 20.5 years ago by ▴ 770 • written 20.5 years ago by ▴ 20
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1
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757
views
maPrintTip confusion
GO GeneSpring ASSIGN GO GeneSpring ASSIGN
updated 19.9 years ago by ▴ 920 • written 19.9 years ago by ▴ 10
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0
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1.3k
views
color labels in hclust plot
ASSIGN ASSIGN
19.9 years ago Rudy.vanEijsden@GEN.unimaas.nl ▴ 50
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1
reply
811
views
read.marrayRaw()
marray ASSIGN marray ASSIGN
updated 19.8 years ago by ▴ 920 • written 19.8 years ago by ▴ 130
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0
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963
views
SAM: the fudge factor in Siggenes and Excel
siggenes ASSIGN siggenes ASSIGN
19.7 years ago Caimiao Wei ▴ 100
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2
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852
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spot weight in limma
oligo ASSIGN oligo ASSIGN
19.5 years ago Ren Na ▴ 250
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2
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954
views
Limma and limmaGUI with Imagene files, problems/bugs report
limma limmaGUI ASSIGN limma limmaGUI ASSIGN
updated 19.4 years ago by 50k • written 19.4 years ago by ▴ 50
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0
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759
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Limma and limmaGUI with Imagene files, problems/bugs report
Normalization limma limmaGUI ASSIGN Normalization limma limmaGUI ASSIGN
19.4 years ago Breuk102 ▴ 50
0
votes
2
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972
views
gene classification problem
GO affy ASSIGN GO affy ASSIGN
updated 19.4 years ago by ▴ 290 • written 19.4 years ago by ▴ 890
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1
reply
634
views
Please help: AffylmGUI errors
Microarray affylmGUI ASSIGN Microarray affylmGUI ASSIGN
updated 19.2 years ago by ★ 7.4k • written 19.2 years ago by ▴ 30
0
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0
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876
views
Please help: AffylmGUI errors (more detail)
Normalization hgu133a affylmGUI ASSIGN Normalization hgu133a affylmGUI ASSIGN
19.2 years ago Aaron Hamilton ▴ 30
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0
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815
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Harry Hurd ▴ 60
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0
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846
views
LPE
cdf affy LPE ASSIGN cdf affy LPE ASSIGN
19.2 years ago Jain, Nitin ▴ 70
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3
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1.0k
views
gcrma problem
Microarray Cancer probe gcrma ASSIGN Microarray Cancer probe gcrma ASSIGN
updated 19.1 years ago by 65k • written 19.1 years ago by ▴ 120
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0
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1.1k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
19.0 years ago Diego Diez ▴ 760
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votes
3
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1.1k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 19.0 years ago by ▴ 760 • written 19.0 years ago by 50k
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0
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1.5k
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Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
11.5 years ago McGee, Monnie ▴ 300
0
votes
4
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1.1k
views
BlueFuse in limmaGUI [was LimmaGUI Error]
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
updated 18.8 years ago by ▴ 170 • written 18.8 years ago by 50k
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3
replies
1.4k
views
LimmaGUI Error
Normalization GO limmaGUI ASSIGN Normalization GO limmaGUI ASSIGN
18.8 years ago Brooke-Powell, Elizabeth ▴ 170
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0
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849
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Spot Quality Weights for Agilent arrays
ASSIGN ASSIGN
18.7 years ago Francesca Guana ▴ 10
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0
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750
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R from Perl
ASSIGN ASSIGN
18.4 years ago Duncan Temple Lang ▴ 110
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2
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1.5k
views
Limma: Extract genes from decideTests result
limma ASSIGN limma ASSIGN
updated 18.2 years ago by ▴ 100 • written 18.2 years ago by ▴ 360
0
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0
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712
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
17.9 years ago Alessio Venier ▴ 40
0
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0
replies
728
views
vsn and microarray blank spots
Normalization vsn limma PROcess ASSIGN Normalization vsn limma PROcess ASSIGN
17.9 years ago Wolfgang Huber ★ 13k
0
votes
1
reply
815
views
[R-SIG-Mac] trouble running Bioconductor
limma BUS ASSIGN limma BUS ASSIGN
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 430
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0
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847
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Top gene list
limma ASSIGN limma ASSIGN
17.6 years ago daphne mouzaki RI ▴ 80
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2
replies
966
views
Single Channel Approach for Agilent Arrays
limma ASSIGN limma ASSIGN
updated 17.6 years ago by ★ 6.0k • written 17.6 years ago by ▴ 100
0
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1
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976
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
17.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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2
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2.0k
views
Outputting dendrogram with large numbers of genes without losing resolution
ASSIGN ASSIGN
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 40
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0
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734
views
Outputting dendrogram with large numbers of genes, without losing resolution
Cancer ASSIGN Cancer ASSIGN
16.8 years ago Aedin Culhane ▴ 510
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votes
0
replies
1.4k
views
Help with lm and predict
ASSIGN ASSIGN
16.7 years ago Nathan Haigh ▴ 120
0
votes
1
reply
1.3k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 16.6 years ago by ★ 1.1k • written 16.6 years ago by ▴ 50
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votes
0
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827
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
16.5 years ago Amin Moghaddasi ▴ 130
0
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0
replies
1.0k
views
automating makeContrasts call in limma
limma ASSIGN limma ASSIGN
16.5 years ago Gordon Smyth 50k
0
votes
2
replies
771
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 16.5 years ago by ▴ 120 • written 16.5 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 15.3 years ago by ▴ 30 • written 15.3 years ago by ▴ 90
50 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
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This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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