Bioconductor Background correction

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agilent single channel plotMA background correction

updated 7.4 years ago by Gordon Smyth 53k • written 7.4 years ago by CantExitVIM ▴ 10

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2.5k

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normalization background correction

updated 8.2 years ago by DataFanatic ▴ 10 • written 10.3 years ago by dimitri.leonid.lindenwald ▴ 50

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1.6k

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agilent microarrays background correction

updated 8.7 years ago by Gordon Smyth 53k • written 8.7 years ago by ragavendrasamy.b • 0

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5.1k

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limma agilent offset background correction microarray

updated 9.7 years ago by James W. MacDonald 68k • written 9.7 years ago by Konstantinos Yeles ▴ 90

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1.3k

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gcrma normalization background correction microarray

9.9 years ago svlachavas ▴ 840

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3.1k

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illumina human ht-12 v4 limma background correction BeadStudio microarray

updated 9.9 years ago by Gordon Smyth 53k • written 9.9 years ago by svlachavas ▴ 840

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1.1k

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Normalization background correction

updated 10.5 years ago by Gordon Smyth 53k • written 18.0 years ago by Bandyopadhyay, Somnath Som ▴ 60

7 results • Page 1 of 1

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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