Bioconductor Bam file

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bam file HIV cytosine

7.2 years ago achaillon • 0

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27k

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R rnaseq bam file

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by Merlin ▴ 10

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bioconductor shortread bam file nucler

updated 6.8 years ago by Dario Strbenac ★ 1.5k • written 6.8 years ago by jfgout ▴ 10

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rsamtools bam file

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by seungjoon.kim • 0

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csaw up regions bam file gain and loss of enrichment

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by JoannaF ▴ 10

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bam file STAR Illumina

updated 6.6 years ago by ta_awwad ▴ 10 • written 6.6 years ago by soheilazareie • 0

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medips bam file

8.5 years ago fkuo ▴ 10

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paired-end reads bam file

7.0 years ago ioannis.vardaxis ▴ 30

8 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman My understanding is that both options would still be mixed models: Even with technical replicates (3 wells per d…

Comment: Differential Expression Genes as Independent Variables by Dario Strbenac ★ 1.5k

Also, the reason why gene abundance is the dependent variable and is iterated over is that there are far more genes than there are samples …

Comment: rrvgo::calculateSimMatrix() error by Phila • 0

Thanks for sharing the solution. It helps me. [nced cloud][1] [1]: https://my-ncedcloud-login.us/

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 170

For your proteomics data, your normalization is correct. I had assumed it was RNA-seq because that is what I think about most. When using…

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@gordonsmyth I will re-run Salmon with the --numGibbsSamples=50 option. Thank you.

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Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Transcript-level differential expression using DESeq2

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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