Bioconductor Bam file

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bioconductor shortread bam file nucler

updated 7.9 years ago by Dario Strbenac ★ 1.6k • written 7.9 years ago by jfgout ▴ 10

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1.7k

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csaw up regions bam file gain and loss of enrichment

updated 9.8 years ago by Aaron Lun ★ 29k • written 9.8 years ago by JoannaF ▴ 10

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bam file HIV cytosine

8.3 years ago achaillon • 0

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30k

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R rnaseq bam file

updated 7.7 years ago by Gordon Smyth 53k • written 7.7 years ago by Merlin ▴ 10

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4.9k

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rsamtools bam file

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by seungjoon.kim • 0

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paired-end reads bam file

8.2 years ago ioannis.vardaxis ▴ 30

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1.6k

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bam file STAR Illumina

updated 7.8 years ago by ta_awwad ▴ 10 • written 7.8 years ago by soheilazareie • 0

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1.6k

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medips bam file

9.6 years ago fkuo ▴ 10

8 results • Page 1 of 1

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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