Showing : bed files • reset
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Compute average score across multiple bed files
chip-seq granges R bed files
updated 7.3 years ago by • 0 • written 7.3 years ago by • 0
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I need to measure distance of PAR-CLIP data to RNA regions
parclip bedtools bed files gff3
7.8 years ago linuxborg2 • 0
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1
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Filtering a BED file according to genomic annotation
bed files bedtools filtering chipseq
updated 7.9 years ago by ★ 29k • written 7.9 years ago by ▴ 60
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getReadCountsFromBAM including bed information
cn.mops bed files getReadCountsFromBAM
8.4 years ago Pau Marc Muñoz Torres ▴ 20
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Bioconductor RNA-seq bed file read-in/download then wavelet transform
bed files wavelet rna-seq
updated 8.6 years ago by 4.2k • written 8.6 years ago by • 0
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How to extract non-overlapping genes from a a bed file?
gene density bed files gff
9.3 years ago birdguy.saikat • 0
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import.bed fails on bed file with no scores
rtracklayer import bed files
9.6 years ago jmr • 0
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customproDB: gene fusions
fusion bed files gene fusion bed file
9.7 years ago ramaniak • 0
8 results • Page 1 of 1
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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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