Bioconductor Bed files

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chip-seq granges R bed files

updated 6.3 years ago by spotifywebplayer • 0 • written 6.3 years ago by jinseok • 0

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1.1k

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parclip bedtools bed files gff3

6.8 years ago linuxborg2 • 0

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bed files bedtools filtering chipseq

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by rbronste ▴ 60

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cn.mops bed files getReadCountsFromBAM

7.4 years ago Pau Marc Muñoz Torres ▴ 20

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1.1k

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bed files wavelet rna-seq

updated 7.6 years ago by shepherl 4.1k • written 7.6 years ago by whgsnp • 0

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1.5k

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gene density bed files gff

8.3 years ago birdguy.saikat • 0

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2.7k

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rtracklayer import bed files

8.6 years ago jmr • 0

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1.1k

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fusion bed files gene fusion bed file

8.7 years ago ramaniak • 0

8 results • Page 1 of 1

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Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k

Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…

Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0

Thank you, so much, for this reply!

Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10

That indeed worked, thanks a lot for the help (and for karyoploteR)

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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome

Answer: Epic v2 Annotation CpG_maf source?

Answer: bioconductor packages on bioconda

Filtering low variance genes for WGCNA

A: Filtering low variance genes for WGCNA

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