Bioconductor Bed files

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chip-seq granges R bed files

updated 7.3 years ago by spotifywebplayer • 0 • written 7.3 years ago by jinseok • 0

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parclip bedtools bed files gff3

7.8 years ago linuxborg2 • 0

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bed files bedtools filtering chipseq

updated 7.8 years ago by Aaron Lun ★ 29k • written 7.8 years ago by rbronste ▴ 60

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cn.mops bed files getReadCountsFromBAM

8.3 years ago Pau Marc Muñoz Torres ▴ 20

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bed files wavelet rna-seq

updated 8.5 years ago by shepherl 4.2k • written 8.6 years ago by whgsnp • 0

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gene density bed files gff

9.2 years ago birdguy.saikat • 0

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rtracklayer import bed files

9.6 years ago jmr • 0

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fusion bed files gene fusion bed file

9.7 years ago ramaniak • 0

8 results • Page 1 of 1

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Comment: bake() and cool() resulting in an empty table by Francesc • 0

Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…

Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k

You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…

Comment: Using DESeq2 for age prediction by picasa1983 • 0

Thanks ! Do you have any idea how to do that ?

Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k

The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…

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A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

DESeq2 for candidate gene analysis

Answer: DESeq2 for candidate gene analysis

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