Bioconductor Bed files

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chip-seq granges R bed files

updated 7.5 years ago by spotifywebplayer • 0 • written 7.5 years ago by jinseok • 0

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parclip bedtools bed files gff3

8.0 years ago linuxborg2 • 0

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bed files bedtools filtering chipseq

updated 8.1 years ago by Aaron Lun ★ 29k • written 8.1 years ago by rbronste ▴ 60

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cn.mops bed files getReadCountsFromBAM

8.6 years ago Pau Marc Muñoz Torres ▴ 20

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1.3k

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bed files wavelet rna-seq

updated 8.8 years ago by shepherl 4.3k • written 8.8 years ago by whgsnp • 0

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1.8k

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gene density bed files gff

9.4 years ago birdguy.saikat • 0

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3.1k

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rtracklayer import bed files

9.8 years ago jmr • 0

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fusion bed files gene fusion bed file

9.9 years ago ramaniak • 0

8 results • Page 1 of 1

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Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by TikTs3a3ssalpc • 0

In the Gviz package, individual exon styles like line width or font color are usually global, much like how the Massar Service centralizes …

Comment: limpa analysis advice by Gordon Smyth 53k

I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…

Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k

As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k

Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…

Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Federico Marini ▴ 180

Jumping in on this - all this started because we want to "do it right", i.e. avoiding the post-hoc filtering on the logFC (which is still w…

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C: AnnotationForge makeOrgPackage rsqlite_send_query error

Answer: Limpa Pipeline Order

Answer: Array weights in dpcDE

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

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