Bioconductor Big data

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2.0k

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Probabilistic Algorithms Big Data Job

8.6 years ago Doe, Aimee ▴ 40

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1.2k

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roadmap project annotationhub epigenomics big data

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by kevin.rue ▴ 320

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1.2k

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NGS R statistics genomics big data Job

4.8 years ago • updated 4.0 years ago Luo Weijun ★ 1.6k

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1.1k

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wgcna transcriptome big data metagenomics gene expression

5.8 years ago jol.espinoz ▴ 40

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953

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Rle Big data coverageByTranscript

5.6 years ago hauken_heyken ▴ 80

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813

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computational biology biostatistics big data data science drug discovery Job

4.8 years ago Thomas Girke ★ 1.7k

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798

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big data methylmix memory problem

updated 5.3 years ago by Martin Morgan 25k • written 5.3 years ago by perdedorium • 0

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735

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computational genomic big data bioinformatics Job

4.5 years ago jmaanaki • 0

8 results • Page 1 of 1

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Answer: WGCNA documentation not available by James W. MacDonald 64k

Although people sometimes ask questions about WGCNA on this support site, it's not a Bioconductor package and therefore off-topic. Peter La…

Comment: ATACseqQC shiftGAlignmentsList() problem by Ou, Jianhong ★ 1.3k

try: `gal1 <- shiftGAlignmentsList(gal, outbam='3-AL1_Tn5_shift.bam')`. I will try to figure out why the memory is so high.

Comment: ATACseqQC shiftGAlignmentsList() problem by jfmay • 0

Thanks for your response. The version of ATACseqQC I'm using is 1.26.0. I tried to set bigFile=TRUE. The resulting object *gal1* still ends…

Answer: biomaRt_getBM_Failed to collect lazy table by James W. MacDonald 64k

That's an old bug that you should be able to fix by updating. I can't remember what package, although `db_collect` comes from `dbplyr` (and…

Comment: rDGIdb package inconsistency with web interface by christopherjamessteel1990 • 0

I went on https://www.dgidb.org/api and searched "RPS3A" and got the below result. Not sure how you got something different. There is certa…

Votes

Answer: ScRNAseq analysis scran :: quickcluster Error

Comment: Ensembl down???

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and

Comment: Ensembl down???

Answer: SingleR annotation of several slots/patients

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