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bigwig
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bigwig to counts
DESeq2
edgeR
bigwig
limma
19 months ago • updated 15 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 20 months ago by
complaintguide
• 0 • written 20 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.3 years ago
bas_work
▴ 30
0
votes
5
replies
1.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.1 years ago
lsilva.m
• 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.6 years ago by
kaur.alasoo
▴ 30 • written 6.6 years ago by
borgmichael
• 0
3
votes
15
replies
3.0k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.2k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.3k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.3 years ago by
laurent.lacroix
▴ 30 • written 8.3 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
dborgesrmit
• 0
10 results • Page
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Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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