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Comment: Question on performing ANOVA-like analysis using limma
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What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
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In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
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Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
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The track argument is deprecated now, so you can omit it.
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