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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way
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Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels?
NA values are n…
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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James W. MacDonald
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The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…
Comment: error in getBM (biomaRt): "error: no such table: metadata"
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Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…
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Dear James,
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