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Showing :
BioMart
•
reset
0
votes
1
reply
70
views
biomaRt getLDS server error
biomaRt
Bioma
14 days ago
floriandeckert
▴ 30
3
votes
5
replies
243
views
biomart getLDS giving errors.
biomaRt
20 days ago • updated 17 days ago
hnthirim
▴ 10
2
votes
3
replies
192
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
18 days ago • updated 10 days ago
kieran.short
▴ 10
2
votes
1
reply
315
views
Problems with biomaRt's getLDS
biomaRt
updated 27 days ago by
Curiousity
▴ 20 • written 5 weeks ago by
dr
▴ 10
21
votes
14
replies
1.2k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 13 days ago by
Neri0304
• 0 • written 5 weeks ago by
Dina
▴ 50
1
vote
8
replies
263
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 4 weeks ago by
Martin Morgan
25k • written 5 weeks ago by
ZheFrench
▴ 30
2
votes
0
replies
77
views
News:
News:Ensembl 106 has just been released!
ensembl
biomaRt
ensembldb
5 weeks ago
Benjamin
▴ 20
0
votes
5
replies
227
views
Problems Installing biomaRt
biomaRt
updated 5 weeks ago by
Mike Smith
★ 5.5k • written 6 weeks ago by
ksci
▴ 10
2
votes
5
replies
288
views
from kallisto to deseq2 analysis
biomaRt
DESeq2
tximport
3 months ago
Marianna
• 0
2
votes
3
replies
258
views
Again, query error when trying to retrieve attributes from Phytozome via BiomaRt
Zea_mays
Attributes
biomaRt
Phytozome
updated 3 months ago by
SK
• 0 • written 4 months ago by
s.k.tepler
▴ 10
0
votes
3
replies
246
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 4 months ago by
Mike Smith
★ 5.5k • written 4 months ago by
Ariel Simon
• 0
0
votes
1
reply
177
views
Ensembl dataset version
tximport
rna
rnaseqGene
biomaRt
updated 4 months ago by
ATpoint
★ 1.2k • written 4 months ago by
st3472
• 0
0
votes
2
replies
316
views
Can't convert dog ensembl IDs into gene names
biomaRt
ensembldb
updated 4 months ago by
ATpoint
★ 1.2k • written 4 months ago by
4214811
• 0
1
vote
0
replies
146
views
News:
Ensembl 105 has just been released!
ensembl
biomaRt
ensembldb
5 months ago
mchakiachvili
▴ 20
0
votes
1
reply
205
views
Calculating dn/ds ratios
biomaRt
updated 5 months ago by
Mike Smith
★ 5.5k • written 5 months ago by
morgantom1221
• 0
0
votes
2
replies
232
views
Why does biomart have multiple positions for the same gene
biomaRt
5 months ago
adeler001
• 0
0
votes
1
reply
175
views
biomaRt query interrupted "expected a character string of length 1."
biomaRt
updated 6 months ago by
James W. MacDonald
59k • written 6 months ago by
alexandre.raposo
• 0
0
votes
0
replies
188
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation
biomaRt
ensembldb
6 months ago
Liting
• 0
1
vote
2
replies
321
views
biomaRt connection error
biomaRt
updated 6 months ago by
Mike Smith
★ 5.5k • written 6 months ago by
ATpoint
★ 1.2k
0
votes
8
replies
515
views
Annotating DESeq2 Differential Expression Results
biomaRt
DESeq2
6 months ago
adeler001
• 0
0
votes
0
replies
129
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process
annotationTools
AnnotationFilter
Annotation
biomaRt
6 months ago
Shane
• 0
0
votes
3
replies
285
views
ENSEMBL BIOMART INTERFACE DOWN?
biomaRt
updated 6 months ago by
Mike Smith
★ 5.5k • written 6 months ago by
NVSSJ
• 0
2
votes
1
reply
294
views
Specify hg19 in using biomaRt getBM function
biomaRt
biom
updated 6 months ago by
James W. MacDonald
59k • written 6 months ago by
lei.shang
• 0
1
vote
3
replies
319
views
useEnsemblGenomes not found
biomaRt
7 months ago
lessismore
▴ 20
2
votes
3
replies
413
views
biomart query in R is not matching ensembl website - missing results
ensembldb
biomaRt
updated 7 months ago by
Mike Smith
★ 5.5k • written 7 months ago by
Alice
• 0
1
vote
3
replies
325
views
biomaRt error: database disk image is malformed
biomaRt
updated 7 months ago by
James W. MacDonald
59k • written 7 months ago by
victorcampos1995
• 0
0
votes
1
reply
249
views
Error in curl; timeout when using biomaRt
biomaRt
bioma
updated 7 months ago by
Mike Smith
★ 5.5k • written 7 months ago by
analeonpalacio
▴ 10
0
votes
1
reply
424
views
Retrieve isoform sequences for a protein from UniProt
UniProt.ws
biomaRt
updated 8 months ago by
Mike Smith
★ 5.5k • written 8 months ago by
sgupt46
• 0
0
votes
2
replies
457
views
Ensembl archive challenges
biomaRt
updated 8 months ago by
Mike Smith
★ 5.5k • written 8 months ago by
yunadal
• 0
1
vote
1
reply
397
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 9 months ago by
swbarnes2
★ 1.0k • written 9 months ago by
nlin0907
• 0
0
votes
0
replies
208
views
getGFFSet function CRASHES R session
getGFF
NCBI
biomartr
biomaRt
9 months ago
Matan G.
▴ 40
2
votes
6
replies
431
views
Biomart's getBM returns no genes for an existing GO-term in grch38, and less then expected in grch37
GO
biomaRt
updated 9 months ago by
Mike Smith
★ 5.5k • written 9 months ago by
A
• 0
1
vote
2
replies
391
views
What are these genes ? [How to get Ensembl IDs for them]
AnnotationDbi
biomaRt
updated 9 months ago by
abf
▴ 30 • written 9 months ago by
prabin.dm
• 0
0
votes
6
replies
454
views
Getting paralogus genes from biomart for mouse
biomart
biomaRt
Ensembl
updated 9 months ago by
Kevin Blighe
3.5k • written 9 months ago by
hemantcnaik
• 0
2
votes
8
replies
780
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt
software error
updated 9 months ago by
Mike Smith
★ 5.5k • written 23 months ago by
JINYI
• 0
1
vote
7
replies
607
views
Using R BioMart getting orthologus genes between two species
biomaRt
updated 9 months ago by
Kevin Blighe
3.5k • written 9 months ago by
hemantcnaik
• 0
0
votes
3
replies
414
views
How to correlate bp and Chr columns in the corresponding RSID column?
biomaRt
updated 10 months ago by
James W. MacDonald
59k • written 10 months ago by
iago.junger
• 0
0
votes
2
replies
374
views
Can't retrieve upstream flank (biomaRt)
biomaRt
10 months ago
Pete
• 0
4
votes
5
replies
1.7k
views
BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt
connection
sql
updated 11 months ago by
Joan Miró
• 0 • written 11 months ago by
Anand
▴ 10
0
votes
1
reply
260
views
biomaRt - rice genes database not working
biomaRt
updated 11 months ago by
swbarnes2
★ 1.0k • written 11 months ago by
XUEPING
• 0
4
votes
9
replies
2.1k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 11 months ago by
Mike Smith
★ 5.5k • written 15 months ago by
Zen
▴ 20
6
votes
6
replies
730
views
Weird output of biomaRt R package querying Ensembl IDs (hg19/grch37) to retrieve gene symbols
biomaRt
annnotation
RNASeq
AnnotationDbi
12 months ago
svlachavas
▴ 780
1
vote
0
replies
347
views
News:
Ensembl 104 has just been released!
ensembldb
biomaRt
12 months ago
mchakiachvili
▴ 20
2
votes
6
replies
667
views
BiomaRt getBM Error when converting from Ensemble to RNACentral IDs
biomaRt
written 12 months ago by
Michael
• 0
2
votes
3
replies
392
views
Ensemble site connection error
biomaRt
updated 13 months ago by
Kevin Blighe
3.5k • written 13 months ago by
Makoto
▴ 10
3
votes
2
replies
289
views
Biomart Errors
biomaRt
13 months ago
Dr. Connie Brett
▴ 10
1
vote
2
replies
434
views
BiomaRt conversion
biomaRt
14 months ago • updated 13 months ago
gwendal.lazennec
• 0
2
votes
1
reply
316
views
Retrieve gene description with ensembldb
biomaRt
ensembldb
AnnotationData
updated 13 months ago by
Johannes Rainer
★ 1.9k • written 13 months ago by
António Miguel de Jesus Domingues
▴ 480
0
votes
2
replies
1.2k
views
Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub
biomaRt
14 months ago
rohitsatyam102
▴ 20
0
votes
2
replies
464
views
How to solve operation timed out with biomaRt
biomaRt
updated 4 weeks ago by
Liling
• 0 • written 14 months ago by
Federica
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Answer: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
The key to realize is that your input is a vector of Uniprot **ID**s (also known as 'entry names') . The central identifier in the Uniprot …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! The normalization of SCAN not only log2 but also center to zero transformation. But in my opinion, the latter (center to 0) is …
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Thanks sir! I got it now!
Comment: Reading multiple data segments from FCS 3.0 file
by
SamGG
▴ 270
You should better start a question, but here is some clues. While this operation is refered as concatenate you can find it as coerce in flo…
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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