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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
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0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1]
[1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
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janwilseo
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Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
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James W. MacDonald
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Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
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One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
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donnycrimson
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On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
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