Showing : biomaRT • reset
0
votes
0
replies
1.0k
views
R: R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
0
votes
2
replies
1.1k
views
after updating biomaRt cannot connect any more
biomaRt biomaRt
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 870
0
votes
4
replies
1.7k
views
R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
0
votes
0
replies
936
views
is database RefSeq achievable from any Bioconductor package
biomaRt biomaRt
15.5 years ago mauede@alice.it ▴ 870
0
votes
1
reply
1.1k
views
R: why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
updated 15.5 years ago by 21k • written 15.5 years ago by ▴ 870
0
votes
2
replies
1.3k
views
why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
biomaRt biomaRt
updated 15.5 years ago by ★ 3.4k • written 15.5 years ago by ▴ 870
0
votes
0
replies
1.1k
views
GenomeGraphs issue
affy biomaRt GenomeGraphs affy biomaRt GenomeGraphs
15.5 years ago Zoppoli, Gabriele NIH/NCI [G] ▴ 20
0
votes
2
replies
1.2k
views
annotating reads acording with position on mapping
Annotation annotate biomaRt IRanges Annotation annotate biomaRt IRanges
updated 15.5 years ago by ▴ 450 • written 15.5 years ago by ▴ 810
0
votes
2
replies
1.6k
views
pulling functional information for SNPs
SNP affy biomaRt rtracklayer SNP affy biomaRt rtracklayer
updated 15.6 years ago by ★ 7.4k • written 15.6 years ago by 68k
0
votes
1
reply
1.5k
views
pulling functional information for SNPs
SNP biomaRt SNP biomaRt
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 90
0
votes
1
reply
2.0k
views
biomaRt inconsistency: a missing annotation causes a failed query
biomaRt biomaRt
updated 15.6 years ago by ▴ 500 • written 15.6 years ago by ▴ 80
0
votes
0
replies
802
views
Question about the number of human genes annotated in Pathway of REACTOAM in biomaRt
biomaRt biomaRt
15.6 years ago Gilbert Feng ▴ 300
0
votes
0
replies
2.4k
views
using biomaRt to query cds coordinates with respect to the transcript for a given gene
biomaRt biomaRt
15.6 years ago Andrew Yee ▴ 350
0
votes
3
replies
1.6k
views
where is the "getHomolog" function in biomaRt?
Annotation biomaRt Annotation biomaRt
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 260
0
votes
3
replies
3.5k
views
biomaRt - ensembl - proxy - NCBI36/hg18 - problems
biomaRt Vega biomaRt Vega
15.7 years ago Anthony Ferrari ▴ 110
0
votes
1
reply
1.1k
views
BiomaRt query
biomaRt biomaRt
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 60
1
vote
3
replies
1.2k
views
Get gene structure information: use biomaRt or other annotation packages?
Annotation biomaRt Annotation biomaRt
updated 15.7 years ago by ★ 3.4k • written 15.7 years ago by ★ 4.3k
0
votes
12
replies
4.2k
views
problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
updated 15.7 years ago by ★ 2.0k • written 15.7 years ago by ▴ 50
0
votes
0
replies
925
views
Fwd: problems when trying to use biomaRt
GUI biomaRt GUI biomaRt
15.7 years ago Sean Davis 21k
0
votes
2
replies
1.4k
views
retrieveGenomicFeatureAnnotation.R file supplied with Ringo
biomaRt Ringo biomaRt Ringo
updated 15.7 years ago by ▴ 450 • written 15.7 years ago by ★ 1.3k
0
votes
5
replies
1.5k
views
Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
updated 15.7 years ago by ▴ 570 • written 15.7 years ago by ▴ 400
0
votes
0
replies
912
views
Search queries with biomaRt does not align with online queries via ensembl
GO hgu133plus2 biomaRt GO hgu133plus2 biomaRt
15.7 years ago Tony Chiang ▴ 570
0
votes
2
replies
1.2k
views
Is there a way of counting a miRNA binding sites in a target gene
miRNA biomaRt miRNA biomaRt
updated 15.8 years ago by 21k • written 15.8 years ago by ▴ 870
0
votes
0
replies
1.8k
views
Distinguish Synonymous vs. Non-synonymous SNPs
Sequencing Biostrings biomaRt Sequencing Biostrings biomaRt
15.8 years ago Michael Dondrup ▴ 550
0
votes
4
replies
1.7k
views
biomaRt error
biomaRt biomaRt
updated 15.9 years ago by ▴ 970 • written 15.9 years ago by ▴ 930
0
votes
4
replies
2.0k
views
Get genomic sequences
biomaRt rtracklayer biomaRt rtracklayer
updated 15.9 years ago by ▴ 970 • written 15.9 years ago by ▴ 50
0
votes
1
reply
1.8k
views
problems : getting error : Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0010817" not found
multtest GOstats biomaRt multtest GOstats biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 810
0
votes
0
replies
1.0k
views
Bioconductor Digest, Vol 83, Issue 4
GO biomaRt Category GO biomaRt Category
15.9 years ago Lavinia Gordon ▴ 480
0
votes
1
reply
1.1k
views
offline gene name conversion
biomaRt DAVIDQuery biomaRt DAVIDQuery
updated 15.9 years ago by 68k • written 15.9 years ago by ▴ 60
0
votes
15
replies
3.2k
views
Exon array annotation with limma?
Normalization limma biomaRt oneChannelGUI Normalization limma biomaRt oneChannelGUI
updated 15.9 years ago by ▴ 500 • written 15.9 years ago by ▴ 220
0
votes
0
replies
1.2k
views
Ringo/Starr genomeAnno Object Tips
Annotation biomaRt Ringo Annotation biomaRt Ringo
15.9 years ago Noah Dowell ▴ 410
0
votes
6
replies
2.0k
views
biomaRt queries: optimal size?
GO biomaRt GO biomaRt
updated 15.9 years ago by 68k • written 15.9 years ago by ★ 1.9k
0
votes
1
reply
1.2k
views
Ringo/Starr getProfiles function
biomaRt Ringo Starr biomaRt Ringo Starr
updated 16.0 years ago by ★ 13k • written 16.0 years ago by ▴ 410
0
votes
0
replies
1.8k
views
unexpected genes names list using getBM{biomaRt}
Alignment convert biomaRt Alignment convert biomaRt
16.0 years ago steffen@stat.Berkeley.EDU ▴ 600
0
votes
3
replies
1.9k
views
getBM no connection but listMarts has
SNP biomaRt Vega SNP biomaRt Vega
updated 16.0 years ago by 68k • written 16.0 years ago by ▴ 370
0
votes
0
replies
1.0k
views
translateID in RpsiXML: [was] problems getting new intact networks from ppiDatwa
biomaRt biomaRt
16.0 years ago Tony Chiang ▴ 570
0
votes
0
replies
940
views
ChIPpeakAnno: getAnnotation using biomart 54
Annotation biomaRt Annotation biomaRt
16.0 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.4k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
16.0 years ago Khademul Islam ▴ 30
0
votes
1
reply
1.8k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 16.0 years ago by ★ 4.3k • written 16.0 years ago by ▴ 30
0
votes
1
reply
2.9k
views
installation of org.Hs.eg.db
biomaRt biomaRt
updated 16.0 years ago by ★ 1.1k • written 16.0 years ago by ▴ 810
0
votes
1
reply
1.2k
views
R: R: BioMart error occurred again
miRNA biomaRt miRNA biomaRt
updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ▴ 870
0
votes
3
replies
2.0k
views
R: Can an R script be run through a cron job ?
miRNA PROcess biomaRt miRNA PROcess biomaRt
updated 16.0 years ago by ★ 1.3k • written 16.0 years ago by ▴ 870
0
votes
3
replies
1.2k
views
R: BioMart error occurred again
biomaRt biomaRt
16.0 years ago mauede@alice.it ▴ 870
0
votes
4
replies
2.0k
views
problem connecting to bioMart - NOT proxy error
biomaRt biomaRt
updated 16.0 years ago by ★ 7.4k • written 16.0 years ago by ★ 2.0k
0
votes
6
replies
1.7k
views
hs.Mm.inp.db problem
biomaRt biomaRt
16.0 years ago Iain Gallagher ▴ 930
0
votes
5
replies
3.6k
views
problems in installing biomart
biomaRt biomaRt
updated 16.0 years ago by ▴ 450 • written 16.0 years ago by ▴ 810
0
votes
2
replies
1.7k
views
biomaRt- incorrect number of transcripts
biomaRt biomaRt
updated 16.0 years ago by ▴ 660 • written 16.0 years ago by ▴ 600
0
votes
3
replies
1.8k
views
Error using makeGeneRegion/getBM/listFilters, argument 'what' contains an invalid value: type
biomaRt biomaRt
updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ▴ 90
0
votes
0
replies
772
views
Synonymous / nonSynonymous utility
biomaRt biomaRt
16.0 years ago Paul Leo ▴ 970
0
votes
0
replies
959
views
Query ERROR: caught BioMart::Exception
biomaRt biomaRt
16.1 years ago mauede@alice.it ▴ 870
1,082 results • Page 17 of 22
Recent ...
Replies
Answer: Feedback needed on new user-friendly BED file tool by Kevin Blighe ★ 4.0k
Unsure, James, let me try to answer I use BED files frequently in my bioinformatics work, primarily through command-line tools like BEDT…
Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k
The output you observe from the SigDF object is normal and corresponds to the methylated and unmethylated intensities, separated by color c…
Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
You can achieve this by first extracting the codons from each sequence in the DNAStringSet and then counting their frequencies at each codo…
Answer: Memory error while running alignments by Kevin Blighe ★ 4.0k
Your error arises from insufficient memory allocation on your system. A distance matrix for 50,000 sequences requires substantial RAM. For …
Answer: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by Kevin Blighe ★ 4.0k
The error that you are encountering with DESeq2 indicates that your design matrix is singular, which occurs when the number of samples equa…
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Awards • All
Scholar to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Supporter to fabio.marroni • 0
Popular Question to Guido Hooiveld ★ 4.1k
Popular Question to James W. MacDonald 68k
Locations • All
The Cave, 181 Longwood Avenue, Boston, USA, just now
Saudi Arabia, 1 minute ago
United States, 51 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 857 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6