Showing : biomaRT • reset
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biomaRt: uniprot_mart
GO annotate biomaRt GO annotate biomaRt
updated 14.8 years ago by 68k • written 14.8 years ago by ▴ 10
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can not link the genomic positions queried and their specific annotation, when getting genomic variants annotated by biomaRt package
Annotation GO biomaRt Annotation GO biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 290
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How to get a unique line of annotation for each specific genomic position by using biomaRt package
Annotation biomaRt Annotation biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 290
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How can reach a specific annotation of phytozome by using biomaRt library
Annotation GO Arabidopsis lyrata biomaRt Annotation GO Arabidopsis lyrata biomaRt
14.8 years ago Sean Davis 21k
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How can reach a specific annotation of phytozome by using biomaRt library
Annotation Arabidopsis lyrata biomaRt Annotation Arabidopsis lyrata biomaRt
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 290
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biomaRt/martservice query error
biomaRt biomaRt
updated 14.8 years ago by ★ 13k • written 14.8 years ago by ▴ 10
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Gene Name annotation with ChIPpeakAnno
Annotation AnnotationData annotate convert biomaRt Annotation AnnotationData annotate
14.8 years ago Julie Zhu ★ 4.3k
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1.2k
views
BiomaRt down?
biomaRt biomaRt
updated 14.8 years ago by ▴ 220 • written 14.8 years ago by ★ 1.3k
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Using biomaRt for getting Go Terms
GO biomaRt GO biomaRt
updated 2.7 years ago by • 0 • written 14.9 years ago by ▴ 190
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RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
14.9 years ago Vincent J. Carey, Jr. 6.7k
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BioMart connection problem
biomaRt biomaRt
14.9 years ago Paul Leo ▴ 970
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How do I use biomaRt to get upstreamFlank Genomic Sequence for many Genomes?
Alignment biomaRt genomes Alignment biomaRt genomes
14.9 years ago Noah Dowell ▴ 410
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2.4k
views
biomaRt - attribute mirbase is missing
SNP miRNA GUI biomaRt Vega SNP miRNA GUI biomaRt Vega
updated 14.9 years ago by ▴ 660 • written 14.9 years ago by ▴ 460
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Bioinformatics Opening @ Barts Cancer Centre
Cancer biomaRt Cancer biomaRt
14.9 years ago Claude Chelala ▴ 40
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3
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1.7k
views
Problems accessing Ensembl archive 59 with EnsEMBL
biomaRt biomaRt
updated 15.0 years ago by ▴ 660 • written 15.0 years ago by ▴ 510
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1
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1.0k
views
Localizing repetitive regions on a chromosome
BSgenome biomaRt BSgenome rtracklayer BSgenome biomaRt BSgenome rtracklayer
updated 15.0 years ago by ★ 11k • written 15.0 years ago by ▴ 500
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Flanking TSS region for reverse strand using biomaRt
Yeast Organism biomaRt Yeast Organism biomaRt
updated 15.0 years ago by ▴ 10 • written 15.0 years ago by ▴ 340
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CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA biomaRt miRNA biomaRt
15.0 years ago James W. MacDonald 68k
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CORNA and biomaRt packages. miRNA and mRNA expression comparation
miRNA biomaRt miRNA biomaRt
updated 15.0 years ago by ▴ 340 • written 15.0 years ago by ▴ 350
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1
reply
852
views
MySQL mode is not available in biomaRt?
biomaRt biomaRt
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 10
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8
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3.6k
views
biomaRt - batch query for chromosome location to gene identifier?
biomaRt ASSIGN biomaRt ASSIGN
updated 15.0 years ago by 6.7k • written 15.0 years ago by ▴ 120
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1.3k
views
Error in makeGeneRegion from GenomeGraphs
biomaRt GenomeGraphs biomaRt GenomeGraphs
updated 15.0 years ago by ★ 6.6k • written 15.0 years ago by ★ 1.1k
0
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1.3k
views
Error while ChIPpeakAnno installation
limma biomaRt IRanges ChIPpeakAnno limma biomaRt IRanges ChIPpeakAnno
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 260
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omitted rows using getBM
probe biomaRt probe biomaRt
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 70
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3
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4.2k
views
Unambiguously mapping of affy IDs to gene symbols using hgu133plus2.db
Annotation hgu133plus2 biomaRt Annotation hgu133plus2 biomaRt
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 170
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1.2k
views
Problem with genomicFeatures: id2name
BSgenome biomaRt BSgenome GenomicFeatures BSgenome biomaRt BSgenome GenomicFeatures
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 970
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1.2k
views
Agilent probenames and biomaRt
Annotation probe annotate biomaRt Annotation probe annotate biomaRt
updated 15.2 years ago by 68k • written 15.2 years ago by ▴ 60
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BioMart error
GO BSgenome biomaRt BSgenome GO BSgenome biomaRt BSgenome
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 80
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2
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2.6k
views
E. coli annotation to map?
biomaRt genomes biomaRt genomes
updated 15.2 years ago by ▴ 500 • written 15.2 years ago by ▴ 40
2
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3
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2.6k
views
How to get position for each gene ID/gene symbol instead of position for each transcript
Organism PROcess biomaRt GenomicFeatures Organism PROcess biomaRt GenomicFeatures
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ★ 1.0k
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3
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1.6k
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gene2pathway retrain: which model is more complete?
Genetics Coverage biomaRt gene2pathway Genetics Coverage biomaRt gene2pathway
15.3 years ago Bogdan ▴ 50
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1.4k
views
biomaRt and hapmap "virtualSchema" parameter mis-specification
biomaRt biomaRt
updated 15.3 years ago by ▴ 500 • written 15.3 years ago by ▴ 10
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3
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1.3k
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get position information for different gene/transcript IDs
biomaRt biomaRt
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ★ 1.0k
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879
views
Ensembl marts updated to rel. 59 in BioMart Central Portal
biomaRt biomaRt
15.3 years ago jorge zamora ▴ 40
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clarification on MULTI SPECIES COMPARISONS filters
biomaRt biomaRt
15.3 years ago jorge zamora ▴ 40
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1.1k
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biomaRt problem
biomaRt biomaRt
15.3 years ago Wolfgang Huber ★ 13k
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1
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2.5k
views
Limit for chromosomal regions in biomaRt?
biomaRt biomaRt
updated 15.3 years ago by ▴ 500 • written 15.3 years ago by ▴ 170
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0
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989
views
biomaRt problem
biomaRt biomaRt
15.3 years ago anupam sinha ▴ 270
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0
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907
views
Concerning your response to "Error message working with ChIPpeakAnno"
convert biomaRt convert biomaRt
15.4 years ago Julie Zhu ★ 4.3k
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4
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2.3k
views
biomaRt
biomaRt biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 270
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1
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1.3k
views
biomaRt bug - shuffling getBM headers and content
biomaRt biomaRt
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 80
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1.6k
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error/problem with biomaRt gene symbol query
Microarray Cancer probe biomaRt ASSIGN Microarray Cancer probe biomaRt ASSIGN
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 100
0
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1.5k
views
biomaRt Error : Affy Human Exon array annotation
cdf annotate convert biomaRt cdf annotate convert biomaRt
updated 15.4 years ago by 68k • written 15.4 years ago by ▴ 260
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1.4k
views
GO term enrichment
Microarray GO probe biomaRt Microarray GO probe biomaRt
updated 15.4 years ago by ★ 7.2k • written 15.4 years ago by ★ 1.5k
0
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1.7k
views
error in function reduce from girafe
Annotation annotate biomaRt IRanges girafe Annotation annotate biomaRt IRanges girafe
updated 15.4 years ago by ▴ 450 • written 15.4 years ago by ▴ 810
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1
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1.3k
views
biomaRt: error using dataset from HapMap_rel27 mart
SNP biomaRt SNP biomaRt
updated 15.4 years ago by ▴ 500 • written 15.4 years ago by ▴ 10
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4
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4.7k
views
biomaRt connection problems
biomaRt biomaRt
updated 15.4 years ago by 21k • written 15.4 years ago by ★ 3.4k
0
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1
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1.7k
views
58 ensembl marts in biomart.org
biomaRt Vega biomaRt Vega
15.5 years ago • updated 15.4 years ago jorge zamora ▴ 40
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4
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3.0k
views
biomaRt
probe affy biomaRt probe affy biomaRt
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 340
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1
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1.4k
views
is database RefSeq achievable from any Bioconductor package
Annotation Cancer biomaRt GenomicFeatures Annotation Cancer biomaRt GenomicFeatures
updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ★ 13k
1,082 results • Page 16 of 22
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Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k
You can achieve this by first extracting the codons from each sequence in the DNAStringSet and then counting their frequencies at each codo…
Answer: Memory error while running alignments by Kevin Blighe ★ 4.0k
Your error arises from insufficient memory allocation on your system. A distance matrix for 50,000 sequences requires substantial RAM. For …
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The error that you are encountering with DESeq2 indicates that your design matrix is singular, which occurs when the number of samples equa…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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