Bioconductor Bootstrap

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salmon rna-seq swish bootstrap fishpond

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by samuelcjx • 0

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salmon tximport bootstrap

updated 5.8 years ago by julia.jefferson23 • 0 • written 5.8 years ago by Cindy • 0

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tree bootstrap dgelist plotmds

7.8 years ago Larry K. • 0

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jackknifing R microarray bootstrap

8.5 years ago bhgyu ▴ 30

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GSVM bootstrap snow

updated 8.9 years ago by Robert Castelo ★ 3.4k • written 8.9 years ago by mforde84 ▴ 20

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ape bootstrap node phylogenetic tree

10.5 years ago wd ▴ 30

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deseq2 bootstrap differential expression

updated 10.8 years ago by Michael Love 43k • written 10.8 years ago by David Eccles (gringer) ▴ 30

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Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Answer: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

The limma Users Guide explains how to test for interactions or to test for contrasts very easily. limma can work with any design matrix, bu…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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