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bsmooth
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BSmooth does give DMRs without no replicate data sets
bsmooth
without replicate
dimension
7.3 years ago
nilaycan
• 0
0
votes
6
replies
2.5k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq
bsmooth
8.0 years ago
ravi.tharakan
• 0
0
votes
0
replies
1.4k
views
bsseq - dmrFinder error
bsseq r package
bsmooth
dmrFinder
8.3 years ago
parker
• 0
0
votes
6
replies
2.7k
views
BSmooth error during the smoothing step for a subset of files
bsseq
bsmooth
updated 8.5 years ago by
Peter Hickey
▴ 760 • written 8.6 years ago by
brandon.le
• 0
1
vote
3
replies
1.8k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq
bsmooth
8.8 years ago
zuupcat
• 0
0
votes
3
replies
3.2k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 24 months ago by
Adam
• 0 • written 10.6 years ago by
unmeshj
• 0
6 results • Page
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
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teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
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DESeq2 for candidate gene analysis
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Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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