Bioconductor Bugs

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2.3k

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bugs limma

3.1 years ago Zhenyu • 0

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2.1k

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arrayexpress affy bugs

updated 7.6 years ago by James W. MacDonald 68k • written 7.6 years ago by Ed Siefker ▴ 230

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3.4k

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GSVA bug gsva bugs

updated 8.0 years ago by Robert Castelo ★ 3.4k • written 8.0 years ago by JasonL_Weirather ▴ 10

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1.4k

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DiffBind bugs

updated 8.4 years ago by Rory Stark ★ 5.2k • written 8.4 years ago by jeremydt • 0

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1.9k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 8.9 years ago by Hervé Pagès 16k • written 8.9 years ago by wcstcyx ▴ 30

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1.7k

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annotationhub bugs encode bed

8.9 years ago wcstcyx ▴ 30

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1.3k

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bugs impute

9.1 years ago Shicheng Guo • 0

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2.1k

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software error bugs deseq2

updated 9.7 years ago by Michael Love 43k • written 9.7 years ago by john.hu • 0

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1.8k

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monocle bugs

9.9 years ago wanghao1993333 • 0

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2.0k

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ggbio bugs tracks autoplot

10.7 years ago cooketho • 0

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1.8k

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arrayqualitymetrics bugs error

updated 10.9 years ago by James W. MacDonald 68k • written 11.0 years ago by daugherty_a • 0

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2.4k

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Bugs deseq2

updated 11.1 years ago by Michael Love 43k • written 11.1 years ago by lmf.bill@gmail.com ▴ 10

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1.7k

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Bugs ggbio

11.1 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0

Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …

Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0

Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…

Votes

Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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