Bioconductor Bugs

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1.9k

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bugs limma

2.5 years ago Zhenyu • 0

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1.9k

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arrayexpress affy bugs

updated 7.0 years ago by James W. MacDonald 68k • written 7.0 years ago by Ed Siefker ▴ 230

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3.0k

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GSVA bug gsva bugs

updated 7.4 years ago by Robert Castelo ★ 3.4k • written 7.4 years ago by JasonL_Weirather ▴ 10

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1.3k

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DiffBind bugs

updated 7.8 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by jeremydt • 0

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1.7k

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txdb.hsapiens.ucsc.hg19.knowngene seqlevels bugs

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by wcstcyx ▴ 30

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1.5k

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annotationhub bugs encode bed

8.3 years ago • updated 8.2 years ago wcstcyx ▴ 30

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1.2k

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bugs impute

8.5 years ago Shicheng Guo • 0

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1.9k

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software error bugs deseq2

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by john.hu • 0

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1.7k

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monocle bugs

9.3 years ago wanghao1993333 • 0

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1.9k

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ggbio bugs tracks autoplot

10.1 years ago cooketho • 0

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1.7k

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arrayqualitymetrics bugs error

updated 10.3 years ago by James W. MacDonald 68k • written 10.3 years ago by daugherty_a • 0

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2.2k

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Bugs deseq2

updated 10.5 years ago by Michael Love 43k • written 10.5 years ago by lmf.bill@gmail.com ▴ 10

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1.6k

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Bugs ggbio

10.5 years ago Anne Deslattes Mays ▴ 30

13 results • Page 1 of 1

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Comment: Using tximport for kallisto aligned recount2 data by ATpoint ★ 4.7k

recount 2 does not use kallisto, does it? And recount does offer genelevel counts, so what's the point?

Comment: Seeking Advice on HTA 2.0 Microarray Data Processing with Oligo Package by Yao Lipu • 0

Thank you for your help! Your explanation was very clear and really helped me solve my issue. I truly appreciate your time and effort!

Answer: Surprising behavior for DEXseq dispersion estimate plot? by Snow • 0

Interesting adaptation of DEXseq, Elijah! Seeing those dispersion estimates makes me think about optimizing slopes, just like in [Snow Ride…

Answer: library org.Hs.eg.db failing to install by James W. MacDonald 68k

It should just install. ``` > library(BiocManager) Bioconductor version 3.20 (BiocManager 1.30.25), R 4.4.1 (2024-06-14 ucrt) W…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by Elijah • 0

Thank you so much for your quick reply! I was worried if some underlying technical artifact or unusual behavior would be causing the patter…

Votes

Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?

Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms

A: WGCNA sample size minimum: why?

WGCNA sample size minimum: why?

Answer: Surprising behavior for DEXseq dispersion estimate plot?

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