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bugs
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0
votes
11
replies
2.4k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
3.3 years ago
Zhenyu
• 0
0
votes
2
replies
2.1k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
3.5k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 8.2 years ago by
Robert Castelo
★ 3.4k • written 8.2 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.4k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 8.6 years ago by
Rory Stark
★ 5.2k • written 8.6 years ago by
jeremydt
• 0
2
votes
3
replies
2.1k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.8k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
9.1 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.4k
views
Bugs for impute package
bugs
impute
9.3 years ago
Shicheng Guo
• 0
0
votes
4
replies
2.2k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
john.hu
• 0
0
votes
0
replies
1.8k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
10.1 years ago
wanghao1993333
• 0
0
votes
2
replies
2.1k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
10.9 years ago
cooketho
• 0
4
votes
3
replies
1.9k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 11.1 years ago by
James W. MacDonald
68k • written 11.1 years ago by
daugherty_a
• 0
0
votes
4
replies
2.4k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 11.3 years ago by
Michael Love
43k • written 11.3 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.7k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
11.3 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
1 of 1
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Comment: Ensembl site unresponsive via biomaRt
by
immellinda8
• 0
Fun, dramatic, and incredibly addictive [Poor Bunny][1] will make you laugh, scream, and keep you glued to the screen. Can you help the poo…
Comment: Limma-voom sample weights and impact on DEG numbers
by
rosarygaseous
• 0
I have faced similar issues before, and often the problem comes down to package versions or R/Bioconductor compatibility. Make sure your R …
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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