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bugs
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reset
0
votes
11
replies
1.5k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
19 months ago
Zhenyu
• 0
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
2.3k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 6.6 years ago by
Robert Castelo
★ 3.3k • written 6.6 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.1k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 6.9 years ago by
Rory Stark
★ 5.2k • written 6.9 years ago by
jeremydt
• 0
2
votes
3
replies
1.4k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.2k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.4 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.1k
views
Bugs for impute package
bugs
impute
7.6 years ago
Shicheng Guo
• 0
0
votes
4
replies
1.6k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
john.hu
• 0
0
votes
0
replies
1.4k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.4 years ago
wanghao1993333
• 0
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.2 years ago
cooketho
• 0
4
votes
3
replies
1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 9.5 years ago by
James W. MacDonald
65k • written 9.5 years ago by
daugherty_a
• 0
0
votes
4
replies
2.0k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 9.6 years ago by
Michael Love
41k • written 9.6 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.4k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
9.6 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
1 of 1
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Replies
Comment: Why p value inconsistent when using different number of pathway score?
by
Chris
• 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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