Showing : cancer • reset
1
vote
0
replies
2.2k
views
pileup coverage from BAM file
Coverage Cancer IRanges GenomicRanges Coverage Cancer IRanges GenomicRanges
12.8 years ago Martin Morgan 25k
0
votes
0
replies
2.0k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.9 years ago Ed Schwalbe ▴ 20
0
votes
0
replies
1.0k
views
question about how to get ranges in Biostrings
Cancer IRanges Gviz Cancer IRanges Gviz
12.9 years ago Hervé Pagès 16k
0
votes
0
replies
1.2k
views
Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
12.9 years ago Hervé Pagès 16k
0
votes
1
reply
2.6k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
12.9 years ago Matthew Thornton ▴ 390
0
votes
3
replies
1.5k
views
speed of runmed on SimpleRleList
Coverage Cancer Coverage Cancer
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 740
0
votes
0
replies
1.0k
views
New course material: Intermediate R / Bioc for High-Throughput Sequence Analysis
Annotation Visualization Cancer Annotation Visualization Cancer
12.9 years ago Martin Morgan 25k
0
votes
0
replies
1.0k
views
Extract Exon Features from GenomicFeatures Leads to Inconsistent Pairing of Gene and Exon IDs
Cancer GenomicFeatures Cancer GenomicFeatures
12.9 years ago Hervé Pagès 16k
0
votes
0
replies
1.9k
views
Job openings at Barts Cancer Institute, QMUL: Postdoctoral Research assistant and Bioinformatician
Sequencing Cancer Breast Sequencing Cancer Breast
12.9 years ago Claude Chelala ▴ 40
0
votes
0
replies
1.8k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.9 years ago stefano iacus ▴ 430
0
votes
1
reply
3.7k
views
a diffBind problem
Cancer edgeR DiffBind Cancer edgeR DiffBind
12.9 years ago Rory Stark ★ 5.2k
0
votes
13
replies
3.0k
views
statistical test for time course data
Cancer limma edgeR Cancer limma edgeR
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 260
0
votes
2
replies
1.5k
views
LogFC query in Limma
Pathways Cancer probe limma convert Pathways Cancer probe limma convert
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 130
0
votes
0
replies
787
views
Course reminder: Intermediate R / Bioc for Sequence Analysis
Cancer Cancer
12.9 years ago Martin Morgan 25k
0
votes
1
reply
869
views
Best Package To Normalize Microarray Data with Few Samples
Microarray Cancer Microarray Cancer
updated 12.9 years ago by ★ 4.2k • written 12.9 years ago by ▴ 230
0
votes
2
replies
1.8k
views
[devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtools?
Coverage Cancer Rsamtools Coverage Cancer Rsamtools
updated 12.9 years ago by ▴ 10 • written 13.0 years ago by 25k
0
votes
6
replies
3.6k
views
about ComBat plot for non parametric
Microarray Cancer Microarray Cancer
updated 12.9 years ago by ▴ 30 • written 13.0 years ago by ▴ 870
0
votes
0
replies
1.0k
views
Error - BSgenomeForge function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
13.0 years ago Hervé Pagès 16k
0
votes
4
replies
920
views
Limma and XML
Cancer Cancer
updated 13.0 years ago by 53k • written 13.0 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 14-15 Feb, Seattle
Cancer Cancer
13.0 years ago Martin Morgan 25k
0
votes
0
replies
1.0k
views
Error installing iFlow (Jaques Fattaccioli)
Cancer iFlow BiocInstaller Cancer iFlow BiocInstaller
13.0 years ago Finak, Greg ▴ 40
0
votes
1
reply
1.3k
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 13.0 years ago by ▴ 450 • written 13.0 years ago by ★ 2.0k
0
votes
0
replies
821
views
Bos taurus genome
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
13.0 years ago Hervé Pagès 16k
0
votes
0
replies
666
views
reducing hits from countGenomicOverlaps()
Cancer Cancer
13.0 years ago Michael Lawrence ★ 11k
0
votes
0
replies
963
views
Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
13.0 years ago Steve Lianoglou ★ 13k
0
votes
28
replies
3.9k
views
countMatches() (was: table for GenomicRanges)
Cancer IRanges Cancer IRanges
updated 13.0 years ago by ★ 11k • written 13.0 years ago by 16k
0
votes
2
replies
1.7k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 13.0 years ago by ▴ 20 • written 13.0 years ago by 25k
0
votes
0
replies
1.9k
views
Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
13.0 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
2.4k
views
Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ★ 2.0k
0
votes
0
replies
1.7k
views
Why does a call to "unique" removes a DNAStringSet names?
Cancer Cancer
13.0 years ago Hervé Pagès 16k
0
votes
1
reply
1.3k
views
edgeR 3.0.6: Possible (small) bug in glmLRT when passing contrasts?
Cancer edgeR Cancer edgeR
updated 13.0 years ago by 53k • written 13.1 years ago by ▴ 30
0
votes
0
replies
1.3k
views
Job postings - computational biologists in translational science
Sequencing Cancer Sequencing Cancer
13.1 years ago Crispin Miller ★ 1.1k
0
votes
4
replies
1.4k
views
question about TranscriptDb
Cancer Cancer
updated 13.1 years ago by ★ 7.2k • written 13.1 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Fwd: all human gene coordinates
Cancer Cancer
updated 13.1 years ago by ▴ 440 • written 13.1 years ago by ★ 13k
0
votes
1
reply
1.3k
views
filter low expression tags
Cancer Cancer
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 40
0
votes
7
replies
3.0k
views
Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 13.1 years ago by ★ 1.2k • written 13.1 years ago by ★ 2.0k
0
votes
8
replies
2.6k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 13.1 years ago by ★ 11k • written 13.1 years ago by 16k
0
votes
0
replies
1.0k
views
readAligned with bowtie2 input
Alignment Cancer ShortRead Alignment Cancer ShortRead
13.1 years ago Martin Morgan 25k
0
votes
0
replies
1.5k
views
Error: cannot allocate vector of size 618.0 Mb
Annotation Cancer cdf Annotation Cancer cdf
13.1 years ago Henrik Bengtsson ★ 2.4k
0
votes
5
replies
2.0k
views
EBcoexpress error - initializeHP() error
Microarray Cancer EBcoexpress Microarray Cancer EBcoexpress
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ★ 13k
0
votes
4
replies
1.9k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 13.1 years ago by ▴ 120 • written 13.1 years ago by ★ 13k
0
votes
2
replies
1.6k
views
error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 2.0k
0
votes
3
replies
3.5k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 13.1 years ago by 21k • written 13.1 years ago by ▴ 300
0
votes
3
replies
1.9k
views
limma design (paired and factorial?)
Cancer Prostate limma Cancer Prostate limma
updated 13.1 years ago by 53k • written 13.1 years ago by ▴ 30
0
votes
2
replies
891
views
limma: instances of highly variable paired ratios, but very small p-values
Cancer limma Cancer limma
updated 13.1 years ago by ▴ 20 • written 13.1 years ago by 53k
0
votes
6
replies
2.4k
views
Bioc packages not working with R2.15.2?
Cancer oligo Cancer oligo
updated 13.1 years ago by ★ 4.3k • written 13.1 years ago by ▴ 170
0
votes
0
replies
594
views
limma: instances of highly variable paired ratios, but very small p-values
Cancer limma Cancer limma
13.1 years ago Ryan Basom ▴ 20
0
votes
3
replies
2.4k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 13.1 years ago by 21k • written 13.1 years ago by ★ 2.0k
0
votes
0
replies
1.8k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
13.2 years ago McGee, Monnie ▴ 300
0
votes
0
replies
1.3k
views
Bioinformatics job posting
Sequencing Cancer Sequencing Cancer
13.2 years ago Yinyin Yuan ▴ 10
1,555 results • Page 7 of 32
Recent ...
Replies
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Votes
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
Answer: Limma-voom sample weights and impact on DEG numbers
Awards • All
Teacher to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Locations • All
The city by the bay, 6 minutes ago
United States, 15 minutes ago
United States, 2 hours ago
The Netherlands, 2 hours ago
Finland, 3 hours ago
Traffic: 1585 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6