Showing : celegans • reset
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Failed Construction of DESEQDataSet Object: C.Elegans
Celegans DESeq2 dds Errorinseq_len(length(idx)-1)
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
1
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1
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1.3k
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Fail to install BSgenome and library
BSgenome Celegans
updated 2.9 years ago by 16k • written 2.9 years ago by • 0
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2
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1.8k
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Error in useMart while using a dataset in biomaRt
biomaRt bioconductor celegans annotation
updated 7.2 years ago by ★ 6.6k • written 7.2 years ago by • 0
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1.1k
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question regarding BSGenome/Biostrings
celegans Biostrings celegans Biostrings
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 210
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1.2k
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concurrent R-release & R-devel versions -- bioc also? [was Re: from TF DNA binding motif to downstream genes?]
Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans
updated 15.1 years ago by 21k • written 15.1 years ago by ★ 1.1k
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2
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Celegans.db_2.3.5: Wormbase version
celegans affy convert celegans affy convert
updated 14.5 years ago by ★ 7.2k • written 14.5 years ago by ★ 4.3k
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2
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2.0k
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Gviz: Add label/title to GenomeAxisTrack
Gviz celegans
updated 7.2 years ago by ▴ 750 • written 7.2 years ago by ▴ 10
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851
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read.affybatch fails with DrosGenome1 chips
Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy
21.5 years ago James W. MacDonald 68k
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Limma: different numbers of duplicated spots
celegans celegans
18.0 years ago Gordon Smyth 52k
9 results • Page 1 of 1
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Comment: Complex contrasts for between and within subject comparisons by wuwenhui2 • 0
@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…
Comment: edgeR design between and within subjects by wuwenhui2 • 0
@luna Hi Aaron, Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy by Daniel • 0
Two things: - PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be: > ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification by Michael Love 43k
Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Comment: Using tximport for kallisto aligned TOIL data by Nicholas • 0
Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …
Votes
Comment: Identifying potentially associated gene set to drug response using GSVA
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
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