Bioconductor Celegans

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658

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Celegans DESeq2 dds Errorinseq_len(length(idx)-1)

updated 2.2 years ago by James W. MacDonald 67k • written 2.2 years ago by Enzo.Scifo • 0

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1.2k

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BSgenome Celegans

updated 2.8 years ago by Hervé Pagès 16k • written 2.8 years ago by Tsung-Han • 0

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1.9k

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Gviz celegans

updated 7.0 years ago by Robert Ivanek ▴ 750 • written 7.0 years ago by alex.gos90 ▴ 10

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1.8k

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biomaRt bioconductor celegans annotation

updated 7.0 years ago by Mike Smith ★ 6.6k • written 7.0 years ago by clarisbaby • 0

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907

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celegans affy convert celegans affy convert

updated 14.4 years ago by Marc Carlson ★ 7.2k • written 14.4 years ago by Julie Zhu ★ 4.3k

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1.2k

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Transcription GO celegans BSgenome Biostrings BSgenome IRanges Transcription GO celegans

updated 15.0 years ago by Sean Davis 21k • written 15.0 years ago by Paul Shannon ★ 1.1k

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1.1k

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celegans Biostrings celegans Biostrings

updated 16.2 years ago by Hervé Pagès 16k • written 16.2 years ago by Elizabeth Purdom ▴ 210

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1.0k

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celegans celegans

17.8 years ago Gordon Smyth 52k

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834

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Microarray Cancer celegans drosgenome1 affy Microarray Cancer celegans drosgenome1 affy

21.3 years ago James W. MacDonald 67k

9 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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