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champ
•
reset
3
votes
7
replies
5.4k
views
error with champ.load
champ
written 6.5 years ago by
o.giannakopoulou
▴ 10
1
vote
16
replies
3.3k
views
error in ChAMP loading file
ChAMP
updated 7 weeks ago by
hortense96
• 0 • written 17 months ago by
Giulia
• 0
2
votes
7
replies
2.4k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 6 months ago by
dorota.komar
• 0 • written 3.4 years ago by
Ankit
▴ 20
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 10 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
0
votes
2
replies
2.0k
views
ChAMP::champ.norm Error in champ.BMIQ(beta[, x], design.v, sampleID = colnames(beta)[x], : task 1 failed - "only defined on a data frame with all…
ChAMP
methylation
BMIQ
updated 5 months ago by
peter.brederlo
• 0 • written 5.0 years ago by
moldach
▴ 20
2
votes
5
replies
1.9k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 7 weeks ago by
James W. MacDonald
65k • written 12 months ago by
angel
• 0
0
votes
7
replies
1.8k
views
error with champ.load
ChAMP
champ
methylation
updated 8 months ago by
mike
• 0 • written 4.1 years ago by
jkong
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 18 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 4 weeks ago by
Tim Peters
▴ 180 • written 5 months ago by
rae.alshammari
▴ 10
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 11 months ago by
hfbarrerat
• 0 • written 3.2 years ago by
Bethan
• 0
0
votes
2
replies
1.0k
views
error when using M-values in ChAMP
ChAMP
updated 5 weeks ago by
hortense96
• 0 • written 6.3 years ago by
a.mcneill
• 0
0
votes
3
replies
721
views
Error in champ.load() function
ChAMP
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Monalisa
• 0
0
votes
2
replies
712
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest
ChAMP
annotation
updated 11 months ago by
James W. MacDonald
65k • written 11 months ago by
Matilda
• 0
0
votes
3
replies
663
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by
Keasiykan
• 0
0
votes
2
replies
658
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP
EPICv2
updated 3 months ago by
shuo
• 0 • written 3 months ago by
ChunkyJones
• 0
0
votes
7
replies
634
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
2
votes
1
reply
583
views
ChAMP can't be found in Bioc3.18?
ChAMP
5 months ago
ramonfallon
▴ 20
1
vote
1
reply
294
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray
methylationArrayAnalysis
ChAMP
updated 10 weeks ago by
James W. MacDonald
65k • written 10 weeks ago by
david.cheishvili
• 0
1
vote
4
replies
234
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 13 days ago by
James W. MacDonald
65k • written 17 days ago by
Mirella Aurora
• 0
0
votes
0
replies
215
views
how to solve this error?
ChAMPdata
ChAMP
11 weeks ago
Meghana
• 0
1
vote
2
replies
157
views
Error in champ.load(): The following specified files do not exist
ChAMP
18 days ago • updated 17 days ago
Sherin
• 0
0
votes
0
replies
156
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
3 months ago
Thalita
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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