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chipqcreport
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Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
7.2 years ago • updated 7.1 years ago
jared.andrews07
▴ 30
1
vote
3
replies
1.3k
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ChIPQC installation does not force latest DiffBind version
chipqc
diffbind
chipqcreport
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 7.4 years ago by
Coby Viner
▴ 50
4
votes
2
replies
1.5k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC
ChIPQCreport
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 7.4 years ago by
ZheFrench
▴ 60
0
votes
1
reply
2.4k
views
Error computing metrics with ChIPQC (Bioconductor v3.5, ChIPQC v2.1.12)
chipqc
chipqcreport
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 7.4 years ago by
Roger
• 0
0
votes
4
replies
1.8k
views
ChIPQCreport Total number of duplicates differs from multiqc/fastqc & RelCC is Inf
ChIPQC
ChIPQCreport
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 7.4 years ago by
ZheFrench
▴ 60
0
votes
2
replies
1.1k
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
6.2 years ago
tapio.envall
• 0
3
votes
5
replies
2.8k
views
ChIPQC - can't read in bam files
chipqc
chipqcreport
6.2 years ago
molly_the_minotaur
▴ 30
0
votes
1
reply
672
views
Empty ChipQC Report
ChipQCReport
updated 21 months ago by
Okan
• 0 • written 23 months ago by
stacy.genovese
• 0
8 results • Page
1 of 1
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Answer: Annotation for EPICv2
by
icecreamlover
• 0
Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
James W. MacDonald
67k
If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…
Comment: Question about using LRT test for time course experiments with DESeq2
by
Denise
• 0
Not really, we are testing some toxic compounds to identify genes that are activated in response to the toxic exposure. Genes that change o…
Votes
A: How does edgeR cpm function calculate log(CPM) values?
Answer: DecideTest vs topTAGs in edgeR
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
Comment: DESeq Input from Salmon + tximport/tximeta
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