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edgeR rpkm source code

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by thibault.lorin ▴ 10

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3.8k

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goseq DESEQ2 RSTUDIO CODE

updated 7.2 years ago by Steve Lianoglou 13k • written 7.2 years ago by amyfm ▴ 10

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221

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estimator roughmethodofmoments DESeq2 R Code

updated 7 months ago by Basti ▴ 530 • written 7 months ago by stew • 0

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574

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r code rna wobble

5.0 years ago fawazfebin ▴ 50

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630

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Coc code conduct Bioconductor News

2.3 years ago Laurent Gatto 1.6k

5 results • Page 1 of 1

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Comment: Empty ChipQC Report by Okan • 0

Hi, I have the same issue. Have you found any solution or any reason why this is happening?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Am I understanding correctly that you have 24 RNA-seq libraries in total, 6 from the pooled samples and 18 from regular samples with biolog…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I'm sorry, I know it is kinda confusing... We have 6 pools in total: Phenotype A: T1a, T2, T1b, T1c Phenotype B: T1, T2 Each pool consist…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

Sorry, I don't understand your experiment. You are reading the edgeR Section on on what to do without replicates, but your experiment appe…

Answer: MA plot by Nathalie • 0

Thank you very much for your help and comments. There is errors in my file. BaseMean is BaseMeanLog2. I don't know how insert a file.

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Volcano Plot in R

Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.

Answer: MA plot

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