Showing : codelink • reset
7
votes
9
replies
2.4k
views
codelink package is not installing
codelink r
10.7 years ago Agaz Hussain Wani ▴ 260
6
votes
6
replies
2.6k
views
Can i set a path for readCodlinkSet()
r differential expression codelink
updated 10.5 years ago by ▴ 760 • written 10.5 years ago by ▴ 260
5
votes
2
replies
1.5k
views
Codelink annotation error in Ubuntu 16.04
codelink annotation ubuntu
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 260
4
votes
4
replies
3.2k
views
Annotation package for Codelink 55K Human Array
r annotation codelink
updated 10.4 years ago by ▴ 760 • written 10.4 years ago by ▴ 260
4
votes
4
replies
1.9k
views
Differential expression on codelink data
r codelink differential expression
updated 10.6 years ago by ▴ 760 • written 10.6 years ago by ▴ 260
4
votes
2
replies
1.9k
views
How to check if the microarray data is from codelink
codelink microarray
updated 7.9 years ago by 21k • written 7.9 years ago by ▴ 260
3
votes
18
replies
3.7k
views
Annotating codelink data file
r codelink annotation annotationdbi
updated 10.6 years ago by ▴ 760 • written 10.6 years ago by ▴ 260
3
votes
26
replies
6.0k
views
How to prepare targets.txt file in codelink.
r codelink
updated 10.6 years ago by ▴ 760 • written 10.7 years ago by ▴ 260
2
votes
5
replies
2.0k
views
How to process Codelink UniSet Rat I Bioarray data
codelink
updated 7.7 years ago by ▴ 760 • written 7.7 years ago by ▴ 260
2
votes
5
replies
2.3k
views
Codelink differential expression and annotation
r codelink differential expression hwgcod
updated 10.5 years ago by ▴ 760 • written 10.5 years ago by ▴ 260
1
vote
2
replies
1.5k
views
problem of codelink
codelink
updated 10.8 years ago by ▴ 760 • written 10.8 years ago by ▴ 10
1
vote
0
replies
1.5k
views
new codelink annotation packages.
Annotation r10kcod probe codelink Annotation r10kcod probe codelink
19.5 years ago Diego Diez ▴ 760
0
votes
0
replies
1.2k
views
problem with chromosome location in annotations WAS: search archives and annnotate questions
Annotation GO annotate affy AnnBuilder codelink Annotation GO annotate affy AnnBuilder
19.6 years ago Diego Diez ▴ 760
0
votes
3
replies
1.5k
views
annotations for Codelink arrays
Annotation GO Cancer r10kcod probe AnnBuilder PROcess biomaRt codelink Annotation GO
updated 18.7 years ago by ▴ 760 • written 18.7 years ago by ★ 1.2k
0
votes
5
replies
1.7k
views
from using biomaRt and r10kcod
r10kcod probe PROcess convert codelink r10kcod probe PROcess convert codelink
updated 18.6 years ago by ▴ 760 • written 18.6 years ago by ★ 1.2k
0
votes
1
reply
1.2k
views
Human whole genome Codelink arrays and paired analysis
codelink codelink
updated 18.2 years ago by ▴ 760 • written 18.2 years ago by ▴ 30
0
votes
1
reply
1.3k
views
codelink analysis
codelink codelink
updated 17.3 years ago by ▴ 760 • written 17.3 years ago by ▴ 10
0
votes
1
reply
1.4k
views
codelink database submission IDs changing
Annotation codelink Annotation codelink
updated 16.5 years ago by ▴ 760 • written 16.5 years ago by ▴ 30
0
votes
6
replies
2.5k
views
annotation package for platform GPL2890
Annotation annotate codelink Annotation annotate codelink
updated 14.2 years ago by ▴ 150 • written 14.2 years ago by ▴ 380
0
votes
0
replies
1.3k
views
Single channel microarray
codelink codelink
14.2 years ago Niraj Nepal ▴ 20
0
votes
10
replies
2.5k
views
How to get feature ID's from the raw codelink data.
r codelink
10.6 years ago Agaz Hussain Wani ▴ 260
0
votes
3
replies
2.7k
views
Undefined columns selected in codelink R package.
r TXT codelink
10.4 years ago Agaz Hussain Wani ▴ 260
0
votes
1
reply
1.2k
views
log transformation the eset
codelink
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
0
votes
1
reply
1.3k
views
data transformation
Normalization vsn codelink Normalization vsn codelink
updated 21.8 years ago by ★ 13k • written 21.8 years ago by ▴ 10
0
votes
1
reply
406
views
Error in readCodelinkSet function
error codelink
updated 7 months ago by 68k • written 7 months ago by • 0
0
votes
0
replies
1.1k
views
Multiple fields in Imagene data files
codelink codelink
21.7 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.4k
views
vsn vs quantiles, bimodal data
Normalization vsn codelink Normalization vsn codelink
21.4 years ago Rohit Ghai ▴ 80
0
votes
0
replies
1.2k
views
Comparison of Affymetrix and CodeLink chip
limma codelink limma codelink
21.1 years ago Binita Dutta ▴ 100
0
votes
0
replies
1.3k
views
affy v codelink
affy limma codelink affy limma codelink
21.1 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
1.2k
views
Amersham codelink help?
affy codelink affy codelink
21.1 years ago Luckey, John ▴ 90
0
votes
0
replies
1.4k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
20.7 years ago Diego Diez ▴ 760
0
votes
3
replies
1.6k
views
Integrating Codelink data with bioconductor (using affy and limmafunctions)
Microarray Annotation Normalization affy limma PROcess codelink ASSIGN Microarray affy
updated 20.7 years ago by ▴ 760 • written 20.7 years ago by 53k
0
votes
0
replies
1.2k
views
using codelink data on limma
Microarray limma codelink Microarray limma codelink
20.3 years ago Bert Wong ▴ 10
0
votes
5
replies
2.0k
views
annotations for Codelink arrays
Annotation codelink Annotation codelink
updated 20.2 years ago by ★ 2.9k • written 20.2 years ago by ▴ 720
0
votes
1
reply
1.3k
views
limma question
Microarray probe limma codelink Microarray probe limma codelink
updated 19.8 years ago by ▴ 30 • written 19.8 years ago by 68k
0
votes
1
reply
1.5k
views
CodeLink Package: Not a Codelink exported file.
codelink ArrayExpress codelink ArrayExpress
updated 19.7 years ago by ▴ 760 • written 19.7 years ago by ▴ 600
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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