Bioconductor Combat sva

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3.4k

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SVA combat sva leek

updated 2.9 years ago by chase.mateusiak • 0 • written 7.0 years ago by amoltej ▴ 10

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923

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combat combat sva pamr limma design matrix sva

5.6 years ago jmsendoya • 0

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818

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combat sva batch effect

5.8 years ago Fp • 0

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628

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combat sva

6.0 years ago jonellevillar • 0

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1.2k

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combat combat sva

6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40

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1.2k

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combat sva microarry Jeff leek

6.8 years ago DataFanatic ▴ 10

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886

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combat sva sva

7.0 years ago alice.anlind • 0

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1.2k

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combat sva input files

7.1 years ago arisarkar88 ▴ 40

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1.2k

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batch effect combat sva sva

7.1 years ago Ahdee ▴ 50

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947

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combat sva

7.4 years ago vinnu260 ▴ 10

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1.5k

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combat sva batch effect comba

updated 7.5 years ago by Vegard Nygaard ▴ 110 • written 7.5 years ago by amoltej ▴ 10

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2.2k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

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920

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combat sva

7.7 years ago kkwon • 0

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1.6k

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affymetrix microarrays sva combat sva batch effect plotMDS

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by svlachavas ▴ 830

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1.2k

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SVA combat sva batch effect

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by amoltej ▴ 10

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1.8k

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ENmix combat.mc illumina450k combat sva

7.8 years ago DSP • 0

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1.1k

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combat sva sga combat batch effect

8.0 years ago John Townsend ▴ 20

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3.1k

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combat sva SVA sva ComBat batch effect

updated 8.0 years ago by W. Evan Johnson ▴ 850 • written 8.0 years ago by John Townsend ▴ 20

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2.4k

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R Combat SVA

updated 8.3 years ago by Steve Lianoglou ★ 13k • written 8.3 years ago by nazaninhoseinkhan • 0

19 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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