Showing : combat • reset
3
votes
8
replies
3.4k
views
What type of data normalization for multiple microarrays?
normalization microarray combat
updated 9.5 years ago by ▴ 30 • written 9.5 years ago by • 0
14
votes
2
replies
4.0k
views
voom with combat
limma voom combat batch effect
updated 9.6 years ago by 53k • written 9.6 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Appropriate input of merged datasets regarding batch effect correction with ComBat in R
microarray batcheffectcorrection affymetrix microarrays ComBat sva
updated 9.6 years ago by ▴ 420 • written 9.6 years ago by ▴ 840
52
votes
20
replies
52k
views
Batch correction in DESeq2
rnaseq batch effect deseq2 combat removebatcheffect()
updated 9.7 years ago by • 0 • written 10.2 years ago by ▴ 110
2
votes
3
replies
2.0k
views
comBat/SVA with no "variable of interest" and two batches
combat sva covariates
updated 9.8 years ago by ▴ 420 • written 9.8 years ago by • 0
0
votes
0
replies
1.5k
views
SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
9.8 years ago John Townsend ▴ 20
7
votes
3
replies
4.2k
views
SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 9.8 years ago by ▴ 870 • written 9.8 years ago by ▴ 20
10
votes
10
replies
5.6k
views
Method for batch correction
combat sva limma
updated 9.9 years ago by ▴ 120 • written 9.9 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Error ,when I use "pa.calls" function on my dataset
panp Combat
9.9 years ago Shamim Sarhadi ▴ 20
1
vote
2
replies
2.5k
views
Evaluation of diagnostic plot resulted from ComBat function regarding batch effect correction of a merged microarray dataset
ComBat diagnostic plot batch effect affymetrix microarrays sva
updated 10.1 years ago by ▴ 870 • written 10.1 years ago by ▴ 840
0
votes
0
replies
2.3k
views
Appropriate implementation of ComBat function for known batch effect correction and alternative methodologies of merging microarray datasets
sva ComBat customcdf affymetrix microarrays limma
10.1 years ago svlachavas ▴ 840
0
votes
2
replies
4.2k
views
Using sva ComBat on DESeq2 Data
deseq2 DE rnaseq sva combat
updated 10.1 years ago by 43k • written 10.1 years ago by • 0
0
votes
6
replies
8.2k
views
ComBat with multiple batches
sva combat 450k
10.1 years ago ben.run974 • 0
4
votes
21
replies
14k
views
DESeq2 and ComBat
deseq2 combat
updated 10.1 years ago by ▴ 610 • written 10.1 years ago by ▴ 100
3
votes
4
replies
6.3k
views
Running Combat in SVA with NA values in matrix
sva combat
10.2 years ago CC ▴ 10
1
vote
1
reply
6.4k
views
Combat generating negative values, should I log2 transform first?
combat batch effect
updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 60
20
votes
18
replies
6.6k
views
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
limma batch effect ComBat differential gene expression
updated 10.4 years ago by ▴ 870 • written 10.4 years ago by ▴ 840
7
votes
7
replies
11k
views
batch effect : comBat or blocking in limma ?
batch effect combat limma block
updated 10.4 years ago by ★ 7.9k • written 10.4 years ago by ▴ 70
1
vote
1
reply
3.1k
views
sva and svaseq for unsupervised analysis of expression data
sva combat gene expression batch effect rnaseq
updated 10.5 years ago by ▴ 650 • written 10.5 years ago by ▴ 10
0
votes
4
replies
2.0k
views
Reproducibility of results with ComBat
sva combat
updated 10.5 years ago by ▴ 650 • written 10.5 years ago by • 0
1
vote
4
replies
4.3k
views
SVA package - for removing batch effect after DESeq - error in ComBat
sva combat
10.7 years ago GFM ▴ 20
2
votes
7
replies
3.0k
views
ComBat Error: in solve.default(t(des) %*% des) : System is computationally singuar: ...
ComBat sva
10.7 years ago edammer • 0
0
votes
6
replies
2.3k
views
Problem in analysing microarray data with ComBat
combat
updated 3.0 years ago by ▴ 870 • written 10.8 years ago by • 0
0
votes
2
replies
6.5k
views
Combat in R (SVA package) error message
combat software error
updated 10.8 years ago by ★ 3.0k • written 10.8 years ago by • 0
0
votes
4
replies
7.8k
views
ComBat: Error non-conformable arguments
ComBat
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
2
votes
6
replies
5.0k
views
Combat for batch effects
combat
10.9 years ago zhouxiuqing • 0
1
vote
2
replies
2.0k
views
Question about the proper way to combine Illumina Human HT-12 v4 expression datasets from different labs
combat batch effect
10.9 years ago jaro.slamecka ▴ 140
1
vote
1
reply
2.0k
views
ComBat (SVA) Application - Two Technical Effects
sva ComBat
updated 11.1 years ago by ▴ 610 • written 11.1 years ago by ▴ 370
0
votes
0
replies
964
views
comBat for multiple diseases
comBat
11.1 years ago sathyabaarathi • 0
0
votes
2
replies
3.2k
views
Remove batch effect - condition partially confounded by data
combat differential gene expression sva
updated 11.1 years ago by ▴ 650 • written 11.1 years ago by • 0
0
votes
0
replies
1.3k
views
How can I use Combat correction parameters from one data set to adjust a new data set with the same batches
combat sva papramters
11.2 years ago p.yishai • 0
4
votes
4
replies
5.3k
views
sva::ComBat without covariate of interest?
sva combat
updated 11.3 years ago by ▴ 870 • written 11.3 years ago by ▴ 110
2
votes
2
replies
4.4k
views
ComBat: should the variable of interest be included into model matrix
ComBat
updated 11.3 years ago by ▴ 870 • written 11.3 years ago by ▴ 10
5
votes
2
replies
4.0k
views
ComBat - Including variable of interest in model matrix?
combat sva
updated 11.3 years ago by ▴ 650 • written 11.3 years ago by ▴ 10
1
vote
3
replies
7.5k
views
Combat - error - system is computationally singular
combat software error rnaseq complex-design
updated 11.4 years ago by ★ 3.0k • written 11.4 years ago by ▴ 40
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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