Showing : combat • reset
3
votes
8
replies
3.3k
views
What type of data normalization for multiple microarrays?
normalization microarray combat
updated 9.3 years ago by ▴ 30 • written 9.3 years ago by • 0
14
votes
2
replies
3.9k
views
voom with combat
limma voom combat batch effect
updated 9.4 years ago by 53k • written 9.4 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Appropriate input of merged datasets regarding batch effect correction with ComBat in R
microarray batcheffectcorrection affymetrix microarrays ComBat sva
updated 9.4 years ago by ▴ 420 • written 9.4 years ago by ▴ 840
52
votes
20
replies
52k
views
Batch correction in DESeq2
rnaseq batch effect deseq2 combat removebatcheffect()
updated 9.5 years ago by • 0 • written 10.0 years ago by ▴ 110
2
votes
3
replies
1.9k
views
comBat/SVA with no "variable of interest" and two batches
combat sva covariates
updated 9.6 years ago by ▴ 420 • written 9.6 years ago by • 0
0
votes
0
replies
1.5k
views
SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
9.6 years ago John Townsend ▴ 20
7
votes
3
replies
3.9k
views
SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 9.7 years ago by ▴ 870 • written 9.7 years ago by ▴ 20
10
votes
10
replies
5.3k
views
Method for batch correction
combat sva limma
updated 9.7 years ago by ▴ 120 • written 9.7 years ago by ▴ 60
0
votes
1
reply
1.3k
views
Error ,when I use "pa.calls" function on my dataset
panp Combat
9.7 years ago Shamim Sarhadi ▴ 20
1
vote
2
replies
2.4k
views
Evaluation of diagnostic plot resulted from ComBat function regarding batch effect correction of a merged microarray dataset
ComBat diagnostic plot batch effect affymetrix microarrays sva
updated 9.9 years ago by ▴ 870 • written 9.9 years ago by ▴ 840
0
votes
0
replies
2.3k
views
Appropriate implementation of ComBat function for known batch effect correction and alternative methodologies of merging microarray datasets
sva ComBat customcdf affymetrix microarrays limma
9.9 years ago svlachavas ▴ 840
0
votes
2
replies
4.1k
views
Using sva ComBat on DESeq2 Data
deseq2 DE rnaseq sva combat
updated 9.9 years ago by 43k • written 9.9 years ago by • 0
0
votes
6
replies
7.9k
views
ComBat with multiple batches
sva combat 450k
9.9 years ago ben.run974 • 0
4
votes
21
replies
14k
views
DESeq2 and ComBat
deseq2 combat
updated 9.9 years ago by ▴ 610 • written 9.9 years ago by ▴ 100
3
votes
4
replies
6.1k
views
Running Combat in SVA with NA values in matrix
sva combat
10.0 years ago CC ▴ 10
1
vote
1
reply
6.2k
views
Combat generating negative values, should I log2 transform first?
combat batch effect
updated 10.2 years ago by ▴ 870 • written 10.2 years ago by ▴ 60
20
votes
18
replies
6.4k
views
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
limma batch effect ComBat differential gene expression
updated 10.2 years ago by ▴ 870 • written 10.2 years ago by ▴ 840
7
votes
7
replies
11k
views
batch effect : comBat or blocking in limma ?
batch effect combat limma block
updated 10.2 years ago by ★ 7.9k • written 10.2 years ago by ▴ 70
1
vote
1
reply
3.1k
views
sva and svaseq for unsupervised analysis of expression data
sva combat gene expression batch effect rnaseq
updated 10.3 years ago by ▴ 650 • written 10.3 years ago by ▴ 10
0
votes
4
replies
2.0k
views
Reproducibility of results with ComBat
sva combat
updated 10.3 years ago by ▴ 650 • written 10.3 years ago by • 0
1
vote
4
replies
4.2k
views
SVA package - for removing batch effect after DESeq - error in ComBat
sva combat
10.5 years ago GFM ▴ 20
2
votes
7
replies
2.9k
views
ComBat Error: in solve.default(t(des) %*% des) : System is computationally singuar: ...
ComBat sva
10.5 years ago edammer • 0
0
votes
6
replies
2.3k
views
Problem in analysing microarray data with ComBat
combat
updated 2.8 years ago by ▴ 870 • written 10.6 years ago by • 0
0
votes
2
replies
6.3k
views
Combat in R (SVA package) error message
combat software error
updated 10.6 years ago by ★ 3.0k • written 10.6 years ago by • 0
0
votes
4
replies
7.6k
views
ComBat: Error non-conformable arguments
ComBat
updated 10.6 years ago by 68k • written 10.6 years ago by • 0
2
votes
6
replies
4.9k
views
Combat for batch effects
combat
10.8 years ago zhouxiuqing • 0
1
vote
2
replies
2.0k
views
Question about the proper way to combine Illumina Human HT-12 v4 expression datasets from different labs
combat batch effect
10.8 years ago jaro.slamecka ▴ 140
1
vote
1
reply
1.9k
views
ComBat (SVA) Application - Two Technical Effects
sva ComBat
updated 10.9 years ago by ▴ 610 • written 10.9 years ago by ▴ 370
0
votes
0
replies
947
views
comBat for multiple diseases
comBat
10.9 years ago sathyabaarathi • 0
0
votes
2
replies
3.1k
views
Remove batch effect - condition partially confounded by data
combat differential gene expression sva
updated 10.9 years ago by ▴ 650 • written 10.9 years ago by • 0
0
votes
0
replies
1.3k
views
How can I use Combat correction parameters from one data set to adjust a new data set with the same batches
combat sva papramters
11.1 years ago p.yishai • 0
4
votes
4
replies
5.3k
views
sva::ComBat without covariate of interest?
sva combat
updated 11.1 years ago by ▴ 870 • written 11.1 years ago by ▴ 110
2
votes
2
replies
4.2k
views
ComBat: should the variable of interest be included into model matrix
ComBat
updated 11.1 years ago by ▴ 870 • written 11.1 years ago by ▴ 10
5
votes
2
replies
3.7k
views
ComBat - Including variable of interest in model matrix?
combat sva
updated 11.1 years ago by ▴ 650 • written 11.1 years ago by ▴ 10
1
vote
3
replies
7.4k
views
Combat - error - system is computationally singular
combat software error rnaseq complex-design
updated 11.2 years ago by ★ 3.0k • written 11.2 years ago by ▴ 40
85 results • Page 2 of 2
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
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The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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