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902
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PCA methods for probe level data
probe affy convert probe affy convert
18.0 years ago James W. MacDonald 68k
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3
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Limma: Nimblegen array data import?
limma convert limma convert
updated 18.0 years ago by 25k • written 18.0 years ago by ▴ 30
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GeneNet
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18.0 years ago Narinder Singh Sahni ▴ 50
0
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8
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Reading Agilent files using read.maimages
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updated 18.2 years ago by ▴ 20 • written 18.2 years ago by ▴ 100
0
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3
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GDS2eSet problems
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18.3 years ago Mcmahon, Wyatt ▴ 50
0
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1
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4.0k
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RE : create an new AnnotatedDataFrame
Annotation Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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create an new AnnotatedDataFrame
Survival Yeast Biobase genefilter tkWidgets marray convert arrayMagic affyio Survival
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 30
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1.4k
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Using Ringo
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18.3 years ago Joern Toedling ▴ 730
0
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2
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Error with arrayQuality
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updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 50
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Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
18.4 years ago Daniel Brewer ★ 1.9k
0
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2
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1.3k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
18.4 years ago Ian Roberts ▴ 70
0
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3
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Help with very old CEL files
convert convert
updated 18.4 years ago by 68k • written 18.4 years ago by ▴ 50
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1.8k
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from gene name to locuslink id
convert convert
updated 18.4 years ago by 21k • written 18.4 years ago by ★ 1.2k
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Normalization of 2 color Nimblegen array
cdf affy affyPLM convert oligo makePlatformDesign cdf affy affyPLM convert oligo
18.4 years ago dhruv pant ▴ 30
0
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1
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matching affy ids from hgu95 to hgu133 (or any other combination)
hgu133a matchprobes convert hgu133a matchprobes convert
updated 18.5 years ago by ★ 1.1k • written 18.5 years ago by ▴ 510
0
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701
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Loop Design to Reference Design
limma convert limma convert
updated 18.5 years ago by ★ 6.0k • written 18.5 years ago by ▴ 130
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5
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from using biomaRt and r10kcod
r10kcod probe PROcess convert codelink r10kcod probe PROcess convert codelink
updated 18.5 years ago by ▴ 760 • written 18.5 years ago by ★ 1.2k
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1
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2.1k
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convert IMAGE Clone ID to Entrez Gene ID
convert convert
updated 18.5 years ago by ▴ 580 • written 18.5 years ago by ▴ 500
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0
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954
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How can I combine rows from two different exprSet's into a new exprSet?
convert convert
18.6 years ago Martin Morgan 25k
0
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0
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1.4k
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marray and limma error with lmFit
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18.6 years ago Paquet, Agnes ▴ 500
0
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0
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1.4k
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RBGL: bfs & dfs with directed graphs
GO Biobase annotate geneplotter graph Rgraphviz annaffy RBGL convert GO Biobase graph
18.6 years ago stephen edwards ▴ 10
0
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2
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1.8k
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getHomolog in biomaRt
convert biomaRt convert biomaRt
updated 18.6 years ago by ▴ 580 • written 18.6 years ago by ▴ 60
0
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10
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2.2k
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biomaRt manual
affy convert biomaRt affy convert biomaRt
updated 18.6 years ago by ★ 6.5k • written 18.6 years ago by ★ 1.2k
0
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0
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Builing annotation package with AnnBuilder using gene symbol
Annotation Cancer probe AnnBuilder convert Annotation Cancer probe AnnBuilder convert
18.7 years ago John Zhang ★ 2.9k
0
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0
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874
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normalization of a microarray like dataframe and removingmissing data by % missing
Microarray Normalization convert Microarray Normalization convert
18.7 years ago michael watson IAH-C ★ 3.4k
0
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0
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891
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Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
18.8 years ago Manhong Dai ▴ 200
0
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1
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1.2k
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making ExpressionSet from ArrayExpress
convert ArrayExpress convert ArrayExpress
updated 18.8 years ago by ▴ 580 • written 18.8 years ago by ★ 13k
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0
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1.1k
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(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.9 years ago Charlyn Suarez ▴ 10
0
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3
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7.8k
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converting GEO soft files to MS excel files
convert convert
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 320
0
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0
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normalizeBetweenArrays gives an error
Normalization marray convert Normalization marray convert
19.0 years ago Gordon Smyth 53k
0
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1
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855
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colnames and get means for the columns with the "same" names
convert convert
updated 19.0 years ago by ★ 1.2k • written 19.0 years ago by 21k
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0
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641
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colnames and get means for the columns with the "same" names
convert convert
19.0 years ago Weiwei Shi ★ 1.2k
0
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0
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problems reading Illumina files using BeadExplorer
affy widgetTools limma marray convert affyio BeadExplorer affy widgetTools limma marray
19.1 years ago Vitalina Komashko ▴ 10
0
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1
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1.9k
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convert .DAT to .CEL
convert convert
updated 19.1 years ago by 68k • written 19.1 years ago by ▴ 10
0
votes
0
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748
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about filtering genes from exprSet by names
Microarray convert Microarray convert
19.2 years ago yanju@liacs.nl ▴ 160
0
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2
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2.1k
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summarizing probe intensites before or after normalization- 1. how to do with RMA 2. Opinions?
Microarray Normalization Preprocessing Cancer probe affy convert affyio Microarray Cancer
19.2 years ago James W. MacDonald 68k
0
votes
3
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1.3k
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Genbank accessions for GOstuff
GO affy convert GO affy convert
updated 19.3 years ago by ▴ 870 • written 19.3 years ago by ▴ 50
0
votes
2
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convert library for microarrays data
convert convert
updated 19.3 years ago by ★ 7.4k • written 19.3 years ago by ▴ 10
0
votes
2
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strange effect of "half" bkg substraction in Limma
limma convert limma convert
updated 19.3 years ago by ▴ 310 • written 19.3 years ago by ★ 1.9k
0
votes
2
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Quick illumina question
convert convert
updated 19.3 years ago by ▴ 550 • written 19.3 years ago by 21k
0
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3
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marrayNorm to exprSet object
Cancer probe convert Cancer probe convert
updated 19.4 years ago by 25k • written 19.4 years ago by ★ 1.9k
0
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3
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1.7k
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Imaging of Protein Array
convert convert
updated 19.4 years ago by ▴ 350 • written 19.4 years ago by ▴ 20
0
votes
0
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652
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[SPAM] Re: Error loading, on Bioconductor 1.8, exprSet generated with bioconductor 1.7
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19.4 years ago Seth Falcon ★ 7.4k
0
votes
0
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903
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timecourse pkg question
TimeCourse convert timecourse TimeCourse convert timecourse
19.5 years ago aaron.j.mackey@gsk.com ▴ 70
0
votes
0
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1.1k
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Limma, marray and Agilent 44K
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19.6 years ago Nataliya Yeremenko ▴ 10
0
votes
5
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getBM (biomaRt) sometimes returns NULL
Annotation limma marray convert biomaRt Annotation limma marray convert biomaRt
updated 19.6 years ago by ★ 13k • written 19.6 years ago by ▴ 250
0
votes
1
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663
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Conversion of affymetrix annotation environment to matrix
GO affy convert GO affy convert
updated 19.7 years ago by ★ 13k • written 19.7 years ago by ★ 3.4k
0
votes
0
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BioC] limma question
Microarray limma convert Microarray limma convert
19.7 years ago Gordon Smyth 53k
0
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0
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limma control spot weights and normalization
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19.8 years ago Gordon Smyth 53k
0
votes
0
replies
678
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Cel objects, smida package, and cond.norm
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19.8 years ago noel0925@sbcglobal.net ▴ 90
462 results • Page 8 of 10
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Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
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Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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